Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq35365 95.1 4e-15 seq31086 93.3 2e-14 seq86 89.7 2e-13 >seq35365 Length=745 Score = 95.1 bits (104), Expect = 4e-15 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | Sbjct 710 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAG 651 Query 50170 CTGCTCTACTCCGC-ATTA 50187 ||||||||| |||| |||| Sbjct 650 CTGCTCTACCCCGCGATTA 632 >seq31086 Length=5831 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 5484 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 5425 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 5424 CTGCTCTACCCCGC 5411 >seq86 Length=7715951 Score = 89.7 bits (98), Expect = 2e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| |||||||||||||| |||| ||| ||||||||| |||||||||| | Sbjct 330566 GTTGCGGAGACGGGATTTGAACCCCTCACCTCAAGGTTATGAGCCTTGCGAGCTACCAAG 330507 Query 50170 CTGCTCTACTCCGC-ATTA 50187 |||||||||||||| |||| Sbjct 330506 CTGCTCTACTCCGCGATTA 330488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181524753773712