Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq116 150 1e-30
seq24 143 2e-28
seq46 89.7 4e-12
seq161 87.8 1e-11
seq49 87.8 1e-11
>seq116
Length=10441785
Score = 150 bits (166), Expect = 1e-30
Identities = 551/850 (65%), Gaps = 22/850 (3%)
Strand=Plus/Plus
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | |||||| || || || | |||||| || || || |||||||| | || |
Sbjct 2151278 GTCATGACACCACCGGCAGTCTCGAGACCAAGGGAGAGTGGGGTGACATCCAAAAGCAAG 2151337
Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781
| || || | ||| |||| | |||| ||||| | || ||||||| |||||| ||
Sbjct 2151338 AGATCCTGCACTTTCTCATTGCCCTCACCACTCAAGA-TGGCAGCTTGAACAGCAGCGCC 2151396
Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839
||| ||||| || ||||| || |||| | || || |||| || |||||||| |||
Sbjct 2151397 ATAGGCAACGGCCTCATCTGGGTTAATGCTCTTGCAA--AGTTCCTTGCCATTGAAGAAA 2151454
Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899
| ||||| || ||||| ||||| | | ||| |||||||| | ||| |||
Sbjct 2151455 TCCTGCAGAAGCTGCTGAACCTTGGGAATCCTGGTTGAACCTCCAACAAGGACAGCATCA 2151514
Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958
|| || || | ||||||| || | |||| ||| || ||||| || || | ||
Sbjct 2151515 TGGACA-GTACTCTTATCCATCTTGGCATCCCTCAAACACTTCTCAACCGGCTCCATACA 2151573
Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018
|| || | ||| || || |||||| | || | || | || | |
Sbjct 2151574 CTTCCTGAAAAGGTCCATGTTGAGCTCCTCGAATCTGGCACGGGTGATGGTCGAGTAGAA 2151633
Query 282019 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078
|||||| || || |||| ||||||| |||||| || || || | | ||| || ||||
Sbjct 2151634 ATCAATACCCTCATACAAGGAATCAATTTCAATGGTGGTCTGCGCAGTAGATGAGAGTGT 2151693
Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA 282138
| || || | ||| || | |||||| | || | | |||| | | | ||| |
Sbjct 2151694 CCTCTTGGCCCTTTCGCAAGATGTCCTCAACCTCCTGAGGGCTCTAG--GGTTGCCGCTG 2151751
Query 282139 ATCTGTTTTATATTTT--CTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTAT 282194
|| | || | || | |||||||| |||| ||| | ||| | || | | || |
Sbjct 2151752 ATGTCCTTCTTGTTCTTCCTCTTGAACTCTTGGACAAA--ATGGTTGACCATTCTGTTGT 2151809
Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254
|||| || || || || | | |||| || | || || |||| | || | || |
Sbjct 2151810 CAAAGTCCTCTCCACCAAGGTGGGTATCACCAGCGGTGGCCTTTACCTCAAAGATACCCT 2151869
Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314
| |||| | | |||| |||||| || |||||||| | ||||| || | ||||
Sbjct 2151870 CCTCAATGGTGAGGAGAGAGACATCAAATGTACCACCACCGAGGTCAAAGATCAAGACAT 2151929
Query 282315 TCATTTCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368
|| | || | | ||| ||| || ||||||||||| |||| |||||| || || |
Sbjct 2151930 TCTTCTCGCCGACACTGGTTGCTTTCTTGTCAAGACCATAAGCAATAGCAGCTGCTGTAG 2151989
Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428
| |||||||| || | || ||||| || || || || || ||||| || ||||| |
Sbjct 2151990 GCTCATTAATGATACGCATCACATTTAGGCCTGCGATGACACCAGCATCCTTGGTGGCCT 2152049
Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488
| | || ||||| || || || || || ||||| | || || | | | || | ||
Sbjct 2152050 GACGCTGGGAATCATTGAAGTACGCTGGGACAGTGACCACAGCGTTTTTCACATTAGATC 2152109
Query 282489 CAATATAAGC 282498
||| ||||||
Sbjct 2152110 CAAGATAAGC 2152119
>seq24
Length=10012559
Score = 143 bits (158), Expect = 2e-28
Identities = 608/939 (65%), Gaps = 40/939 (4%)
Strand=Plus/Plus
Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617
|||||||| ||| |||||| ||| ||| ||| ||||| || || || | || ||
Sbjct 6126202 TCACCCTCATAAACCTGGATAAGGACTCCAGGTTGGTTATCCGAGTAGGTGGAGAACAC- 6126260
Query 281618 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATAC 281672
||| || ||| || ||||| |||||||| ||||| | ||||| | ||
Sbjct 6126261 CTGCTCCTTCTTAGTGGGGATTGTGGTGTTTCTTGGGATCAACACA----GTCATGACAC 6126316
Query 281673 CACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT--TG 281730
| ||||| ||||| | |||| |||||| || |||||||| | || ||||| | ||
Sbjct 6126317 CTCCAGCAGTTTCCAGACCAGAAGAAAGGGGGGTGACATCCAGCAG--CAATAGGTCCTG 6126374
Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790
| || |||| | || | ||| || ||||||| ||| |||||||| || ||
Sbjct 6126375 GACCTTCTCATTGCCCTCGCCGCTCAAAATTGCAGCTTGAACAGCCGCACCATAAGCCAC 6126434
Query 281791 AGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAG 281847
|||||||||||| || | | || || || | || || |||||||||| || ||
Sbjct 6126435 AGCTTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTCCCGTTGAAAAAATCCTGCAAT 6126492
Query 281848 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907
| | || ||||| || || | || || || || || | |||| ||||| | |
Sbjct 6126493 A-GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGAACAACATCATGGATA-G 6126550
Query 281908 TGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAA 281966
|| | || |||| || | |||| | | || ||||| || || | || ||| |
Sbjct 6126551 TGCTCTTGTCCATCTTAGCATCCCTGAGACACTTCTCAACTGGCTCCATACACTTTCTGA 6126610
Query 281967 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATT 282025
| | ||| || || || ||| | || | ||| | || | | || || || |
Sbjct 6126611 AGAGGTCCATGTTGAGCTCCTCAAATCTGGCACGAGTGATTGT-AGAGTAGAAATCCACA 6126669
Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGT 282082
|| || ||||||| |||| ||| || || || || ||||||||| || || | |
Sbjct 6126670 CCCTCATACAAAGAGTCAATTTCGATTGTCGTCTGGGCAGTCGAAGA-GAGCGTTCTC-- 6126726
Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAAT 282140
|| || | |||||| | |||||| | ||| | || || | | |||| | | | |
Sbjct 6126727 TTCGCCCTTTCACAAGATGTCCTCAATCTCCTTAGAGCCCTCG--GATTTCCACTGATGT 6126784
Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200
| | || | || |||||||| |||| ||| | | || | | |||||||| |
Sbjct 6126785 CCTTCTTGTGCTTCCTCTTGAACTCTTGCACAAAGTGGTTCACCATTCTGTTATCAAAGT 6126844
Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260
| || || || | | ||| | ||| | || || | || | || | || || || |
Sbjct 6126845 CCTCCCCACCAAGATGAGTGTCTCCGGCTGTTGCCTTCACCTCAAAGATACCCTCCTCGA 6126904
Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320
| | || | |||||| || || ||||| | ||| ||||| | |||||| | |
Sbjct 6126905 TGGTTAGGAGGGACACATCAAAAGTACCGCCACCAAGATCGAAAATCAACACATTCTTCT 6126964
Query 282321 CTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374
|| | ||| ||||||||||||||||| |||| || ||||||||||| ||||
Sbjct 6126965 CTCCAACACTGGTGGCCTTTTTATCAAGACCATAAGCAATGGCCGCAGCAGTTGGCTCAT 6127024
Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434
|||| || | || ||||| || || ||||| || ||||| || ||||| || || |
Sbjct 6127025 TAATGATACGCATGACATTGAGCCCTGCAATGACACCAGCATCCTTGGTGGCCTGCCTCT 6127084
Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
| || || || || || ||||| || || | ||| ||||
Sbjct 6127085 GGGAGTCATTGAAGTAGGCAGGGACGGTGACAACTGCAT 6127123
>seq46
Length=3638525
Score = 89.7 bits (98), Expect = 4e-12
Identities = 123/170 (72%), Gaps = 3/170 (2%)
Strand=Plus/Minus
Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343
|| |||||||| | ||||||| ||| | |||| | || ||| || | ||||
Sbjct 2090086 GTGCCACCACCGAGGTCAAAAACAAGGATATTCTTCTCACCACCTTTCTTGTC--CAAG- 2090030
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
|| ||||||| ||||||||||| |||||||| |||||||| |||||| || ||||||
Sbjct 2090029 CCGTACGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTAGCAACATTGAGTCCAGCA 2089970
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453
|| || || || || || ||||| || || | |||||| || || ||
Sbjct 2089969 ATAACACCAGCGTCCTTGGTAGCTTGCCTCTGGGCATCGTTGAAGTAGGC 2089920
>seq161
Length=5110746
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178
|| || | ||| || ||||||||||| |||||||| ||| | | || || | ||| |||
Sbjct 4993880 CCATAAGAAAGTGCAGCTGCAGTTGGCTCATTAATGATTCTCTGCACGTCAAGACCTGCA 4993939
Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238
||| | ||| ||| ||||| |||||||| || ||||| || || ||||| || |||
Sbjct 4993940 ATTCTGCCAGCATCTTTGGTTGCCTGTCTCTGGGCATCATTGAAGTAAGCTGGAACCGTA 4993999
Query 86239 ATAACTGCTTT 86249
|| || |||||
Sbjct 4994000 ATCACAGCTTT 4994010
>seq49
Length=4798478
Score = 87.8 bits (96), Expect = 1e-11
Identities = 112/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || |||| |||||| || | | |||||||| |||||||||||||| | | ||
Sbjct 895785 TTCTTTTCAAAACCATAAGCCAGTGATGCAGCAGTAGGTTCATTAATAATGCGGAGCACT 895726
Query 282392 T-TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450
| |||| |||||||| | ||| ||||| || || || ||||| || ||||| || ||
Sbjct 895725 TCTAAG-CCAGCAATACGTCCAGCATCCTTTGTTGCAGTCCTTTGCGAGTCGTTGAAGTA 895667
Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTT 282482
||||||||||| | || || | |||||||
Sbjct 895666 AGCAGGAACAGTGACCACAGCTTTAGTTACTT 895635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3738844492124976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |