Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq116 150 1e-30 seq24 143 2e-28 seq46 89.7 4e-12 seq161 87.8 1e-11 seq49 87.8 1e-11 >seq116 Length=10441785 Score = 150 bits (166), Expect = 1e-30 Identities = 551/850 (65%), Gaps = 22/850 (3%) Strand=Plus/Plus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | |||||| || || || | |||||| || || || |||||||| | || | Sbjct 2151278 GTCATGACACCACCGGCAGTCTCGAGACCAAGGGAGAGTGGGGTGACATCCAAAAGCAAG 2151337 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781 | || || | ||| |||| | |||| ||||| | || ||||||| |||||| || Sbjct 2151338 AGATCCTGCACTTTCTCATTGCCCTCACCACTCAAGA-TGGCAGCTTGAACAGCAGCGCC 2151396 Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 ||| ||||| || ||||| || |||| | || || |||| || |||||||| ||| Sbjct 2151397 ATAGGCAACGGCCTCATCTGGGTTAATGCTCTTGCAA--AGTTCCTTGCCATTGAAGAAA 2151454 Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | ||||| || ||||| ||||| | | ||| |||||||| | ||| ||| Sbjct 2151455 TCCTGCAGAAGCTGCTGAACCTTGGGAATCCTGGTTGAACCTCCAACAAGGACAGCATCA 2151514 Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 || || || | ||||||| || | |||| ||| || ||||| || || | || Sbjct 2151515 TGGACA-GTACTCTTATCCATCTTGGCATCCCTCAAACACTTCTCAACCGGCTCCATACA 2151573 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018 || || | ||| || || |||||| | || | || | || | | Sbjct 2151574 CTTCCTGAAAAGGTCCATGTTGAGCTCCTCGAATCTGGCACGGGTGATGGTCGAGTAGAA 2151633 Query 282019 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 |||||| || || |||| ||||||| |||||| || || || | | ||| || |||| Sbjct 2151634 ATCAATACCCTCATACAAGGAATCAATTTCAATGGTGGTCTGCGCAGTAGATGAGAGTGT 2151693 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA 282138 | || || | ||| || | |||||| | || | | |||| | | | ||| | Sbjct 2151694 CCTCTTGGCCCTTTCGCAAGATGTCCTCAACCTCCTGAGGGCTCTAG--GGTTGCCGCTG 2151751 Query 282139 ATCTGTTTTATATTTT--CTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTAT 282194 || | || | || | |||||||| |||| ||| | ||| | || | | || | Sbjct 2151752 ATGTCCTTCTTGTTCTTCCTCTTGAACTCTTGGACAAA--ATGGTTGACCATTCTGTTGT 2151809 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 |||| || || || || | | |||| || | || || |||| | || | || | Sbjct 2151810 CAAAGTCCTCTCCACCAAGGTGGGTATCACCAGCGGTGGCCTTTACCTCAAAGATACCCT 2151869 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | |||| | | |||| |||||| || |||||||| | ||||| || | |||| Sbjct 2151870 CCTCAATGGTGAGGAGAGAGACATCAAATGTACCACCACCGAGGTCAAAGATCAAGACAT 2151929 Query 282315 TCATTTCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || | || | | ||| ||| || ||||||||||| |||| |||||| || || | Sbjct 2151930 TCTTCTCGCCGACACTGGTTGCTTTCTTGTCAAGACCATAAGCAATAGCAGCTGCTGTAG 2151989 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | |||||||| || | || ||||| || || || || || ||||| || ||||| | Sbjct 2151990 GCTCATTAATGATACGCATCACATTTAGGCCTGCGATGACACCAGCATCCTTGGTGGCCT 2152049 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 | | || ||||| || || || || || ||||| | || || | | | || | || Sbjct 2152050 GACGCTGGGAATCATTGAAGTACGCTGGGACAGTGACCACAGCGTTTTTCACATTAGATC 2152109 Query 282489 CAATATAAGC 282498 ||| |||||| Sbjct 2152110 CAAGATAAGC 2152119 >seq24 Length=10012559 Score = 143 bits (158), Expect = 2e-28 Identities = 608/939 (65%), Gaps = 40/939 (4%) Strand=Plus/Plus Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 |||||||| ||| |||||| ||| ||| ||| ||||| || || || | || || Sbjct 6126202 TCACCCTCATAAACCTGGATAAGGACTCCAGGTTGGTTATCCGAGTAGGTGGAGAACAC- 6126260 Query 281618 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATAC 281672 ||| || ||| || ||||| |||||||| ||||| | ||||| | || Sbjct 6126261 CTGCTCCTTCTTAGTGGGGATTGTGGTGTTTCTTGGGATCAACACA----GTCATGACAC 6126316 Query 281673 CACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT--TG 281730 | ||||| ||||| | |||| |||||| || |||||||| | || ||||| | || Sbjct 6126317 CTCCAGCAGTTTCCAGACCAGAAGAAAGGGGGGTGACATCCAGCAG--CAATAGGTCCTG 6126374 Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790 | || |||| | || | ||| || ||||||| ||| |||||||| || || Sbjct 6126375 GACCTTCTCATTGCCCTCGCCGCTCAAAATTGCAGCTTGAACAGCCGCACCATAAGCCAC 6126434 Query 281791 AGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAG 281847 |||||||||||| || | | || || || | || || |||||||||| || || Sbjct 6126435 AGCTTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTCCCGTTGAAAAAATCCTGCAAT 6126492 Query 281848 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907 | | || ||||| || || | || || || || || | |||| ||||| | | Sbjct 6126493 A-GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGAACAACATCATGGATA-G 6126550 Query 281908 TGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAA 281966 || | || |||| || | |||| | | || ||||| || || | || ||| | Sbjct 6126551 TGCTCTTGTCCATCTTAGCATCCCTGAGACACTTCTCAACTGGCTCCATACACTTTCTGA 6126610 Query 281967 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATT 282025 | | ||| || || || ||| | || | ||| | || | | || || || | Sbjct 6126611 AGAGGTCCATGTTGAGCTCCTCAAATCTGGCACGAGTGATTGT-AGAGTAGAAATCCACA 6126669 Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGT 282082 || || ||||||| |||| ||| || || || || ||||||||| || || | | Sbjct 6126670 CCCTCATACAAAGAGTCAATTTCGATTGTCGTCTGGGCAGTCGAAGA-GAGCGTTCTC-- 6126726 Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAAT 282140 || || | |||||| | |||||| | ||| | || || | | |||| | | | | Sbjct 6126727 TTCGCCCTTTCACAAGATGTCCTCAATCTCCTTAGAGCCCTCG--GATTTCCACTGATGT 6126784 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200 | | || | || |||||||| |||| ||| | | || | | |||||||| | Sbjct 6126785 CCTTCTTGTGCTTCCTCTTGAACTCTTGCACAAAGTGGTTCACCATTCTGTTATCAAAGT 6126844 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 | || || || | | ||| | ||| | || || | || | || | || || || | Sbjct 6126845 CCTCCCCACCAAGATGAGTGTCTCCGGCTGTTGCCTTCACCTCAAAGATACCCTCCTCGA 6126904 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 | | || | |||||| || || ||||| | ||| ||||| | |||||| | | Sbjct 6126905 TGGTTAGGAGGGACACATCAAAAGTACCGCCACCAAGATCGAAAATCAACACATTCTTCT 6126964 Query 282321 CTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 || | ||| ||||||||||||||||| |||| || ||||||||||| |||| Sbjct 6126965 CTCCAACACTGGTGGCCTTTTTATCAAGACCATAAGCAATGGCCGCAGCAGTTGGCTCAT 6127024 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 |||| || | || ||||| || || ||||| || ||||| || ||||| || || | Sbjct 6127025 TAATGATACGCATGACATTGAGCCCTGCAATGACACCAGCATCCTTGGTGGCCTGCCTCT 6127084 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || || || || || ||||| || || | ||| |||| Sbjct 6127085 GGGAGTCATTGAAGTAGGCAGGGACGGTGACAACTGCAT 6127123 >seq46 Length=3638525 Score = 89.7 bits (98), Expect = 4e-12 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || |||||||| | ||||||| ||| | |||| | || ||| || | |||| Sbjct 2090086 GTGCCACCACCGAGGTCAAAAACAAGGATATTCTTCTCACCACCTTTCTTGTC--CAAG- 2090030 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || ||||||| ||||||||||| |||||||| |||||||| |||||| || |||||| Sbjct 2090029 CCGTACGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTAGCAACATTGAGTCCAGCA 2089970 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 || || || || || || ||||| || || | |||||| || || || Sbjct 2089969 ATAACACCAGCGTCCTTGGTAGCTTGCCTCTGGGCATCGTTGAAGTAGGC 2089920 >seq161 Length=5110746 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || | ||| || ||||||||||| |||||||| ||| | | || || | ||| ||| Sbjct 4993880 CCATAAGAAAGTGCAGCTGCAGTTGGCTCATTAATGATTCTCTGCACGTCAAGACCTGCA 4993939 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 ||| | ||| ||| ||||| |||||||| || ||||| || || ||||| || ||| Sbjct 4993940 ATTCTGCCAGCATCTTTGGTTGCCTGTCTCTGGGCATCATTGAAGTAAGCTGGAACCGTA 4993999 Query 86239 ATAACTGCTTT 86249 || || ||||| Sbjct 4994000 ATCACAGCTTT 4994010 >seq49 Length=4798478 Score = 87.8 bits (96), Expect = 1e-11 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || |||| |||||| || | | |||||||| |||||||||||||| | | || Sbjct 895785 TTCTTTTCAAAACCATAAGCCAGTGATGCAGCAGTAGGTTCATTAATAATGCGGAGCACT 895726 Query 282392 T-TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 | |||| |||||||| | ||| ||||| || || || ||||| || ||||| || || Sbjct 895725 TCTAAG-CCAGCAATACGTCCAGCATCCTTTGTTGCAGTCCTTTGCGAGTCGTTGAAGTA 895667 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTT 282482 ||||||||||| | || || | ||||||| Sbjct 895666 AGCAGGAACAGTGACCACAGCTTTAGTTACTT 895635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738844492124976