Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq49 116 2e-21 seq652 100 2e-16 seq116 89.7 3e-13 seq91 84.2 1e-11 seq87 82.4 5e-11 >seq49 Length=4798478 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | ||||| || || ||| || ||||| |||||||| || | Sbjct 2869912 CCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGCT 2869853 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | ||| ||||| ||||||||||| |||||||| ||| | || Sbjct 2869852 AGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2869793 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| ||| |||| ||| | ||| ||| ||||| Sbjct 2869792 ATCCCTTCTTTGTCCTGGATTTTGGCCTTC-ACATTGTCAATGGTATCGGAACTCTCCAC 2869734 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | || || |||||||||||||| Sbjct 2869733 CTCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 2869686 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/243 (69%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || || |||| ||| | ||||| || ||||| |||||| || ||| Sbjct 2870152 AAAATCTGCATGCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATG 2870093 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || ||||| | || || | | || || | ||||| || |||||||| | | |||| Sbjct 2870092 TTATAATCTGCCAGAGTCCTACCATCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGC 2870033 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | ||||||||||| |||||| || || |||| ||| | ||||| Sbjct 2870032 TGATCCGGGGGAATGCCTTCTTTGTCCTGAATTTT-TGCTTTGACATTGTCGATAGTGTC 2869974 Query 33690 ---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| || || || | ||||| ||||| || || | || || |||||||| || Sbjct 2869973 AGAGCT---CTCAACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTGACAAAGATTTG 2869917 Query 33747 CAT 33749 ||| Sbjct 2869916 CAT 2869914 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | || | ||| || || ||| ||||| || |||||||||| Sbjct 2841312 CCACCACGCAGACGGAGGACAAGATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCC 2841253 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | ||||| || ||||||||||| |||||||| ||| | || Sbjct 2841252 AGTGTCCGGCCATCCTCGAGCTGTTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2841193 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCA 33700 | ||||| ||||| || ||| | || |||| || | ||||| | | | || | Sbjct 2841192 ATGCCTTCCTTGTCCTGTATCTTC-GCTTTGACATTATCAATCGTGTC-CGAGCTCTCGA 2841135 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || ||||| |||||||| Sbjct 2841134 CTTCCAAAGTGATAGTCTTGCCAGTCAGAGTCTTCACAAAAATCTGCAT 2841086 Score = 82.4 bits (90), Expect = 5e-11 Identities = 167/243 (69%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || || |||| || | ||||| || |||||| |||||| || ||| Sbjct 2841096 AAAATCTGCATGCCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATG 2841037 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | | || | | || || | ||||| ||||||||||| | | |||| Sbjct 2841036 TTGTAATCCGCCAAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGC 2840977 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | ||||| ||||| ||||||| | || || | ||| | |||||| Sbjct 2840976 TGATCCGGGGGAATGCCTTCCTTGTCCTGAATTTTC-GCTTTGACGTTGTCGATGGTGTC 2840918 Query 33690 ---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| || || || | ||||| ||||| || || | || || ||||| || || Sbjct 2840917 AGAGCT---CTCAACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTG 2840861 Query 33747 CAT 33749 ||| Sbjct 2840860 CAT 2840858 >seq652 Length=2384379 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || ||||| |||||| || ||||| ||||||| Sbjct 465740 CCACCACGCAGACGAAGGACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCGGCC 465681 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | |||| |||| ||| || ||||||||||||| | |||||| ||| | || Sbjct 465680 AGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGGG 465621 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | || || ||||| || || || | |||| ||| | |||||| ||| || Sbjct 465620 ATGCCCTCCTTGTCCTGGATCTT-TGCCTTCACATTGTCGATGGTGTC---TGAACTCTC 465565 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | ||||| || || || || | || || ||||| |||||||| Sbjct 465564 CACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTCTTGACAAAAATCTGCAT 465514 >seq116 Length=10441785 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || || |||||||||| ||| ||||| |||| |||| || || ||||| || Sbjct 4711651 CTCCTTCTGGATATTGTAATCGGCGAGGGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAA 4711710 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| |||| | || || ||||| || ||| ||| |||| Sbjct 4711711 GATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGTATCTTCGCCTTC-ACAT 4711769 Query 33678 AGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | ||||| | | | ||||| || | ||||||||| || || || | || || Sbjct 4711770 TGTCGATCGTGTC-CGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTCTTC 4711828 Query 33736 ACAAAGATCTGCATA 33750 || |||||||||||| Sbjct 4711829 ACGAAGATCTGCATA 4711843 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || || ||||| |||| ||| ||||| |||| || | || || ||||| || Sbjct 4726936 CTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 4726877 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| |||| | || || ||||| ||| ||| ||| |||| Sbjct 4726876 GATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGAATCTTCGCCTTC-ACAT 4726818 Query 33678 AGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | ||||| | | | ||||| || | ||||||||| || ||||| | || || Sbjct 4726817 TGTCGATCGTGTC-CGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCTGTCAGGGTCTTC 4726759 Query 33736 ACAAAGATCTGCATA 33750 || |||||||||||| Sbjct 4726758 ACGAAGATCTGCATA 4726744 >seq91 Length=4251426 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||||| ||| ||||| ||| ||||| ||||| || || | || || ||| | || Sbjct 285790 AACACCAGATGAAGAGTCGACTCCTTTTGGATGTTATAGTCTGCAAGAGTTCGTCCATCT 285849 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||||||| || || ||||||||||| ||||| || || | || | |||||| ||||| Sbjct 285850 TCCAATTGCTTACCAGCAAAAATCAATCGCTGTTGGTCCGGAGGAATACCTTCCTTGTC 285908 >seq87 Length=12262769 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| || || |||| || | || Sbjct 7257228 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGC 7257287 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | |||||||| || | || | || || ||||| || || Sbjct 7257288 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 7257347 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| ||| | ||||||||| || || || || | || || || || || || Sbjct 7257348 GCCTTCA-CATTGTCGATGGTGTCGCTCGACTCGACCTCGAGGGTTATGGTCTTCCCCGT 7257406 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 7257407 TAGGGTTTTCACGAAGATCTGCAT 7257430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328558274833920