Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq444 605 8e-169 seq31551 266 1e-66 seq31730 230 7e-56 seq31523 176 1e-39 seq77 143 8e-30 seq203 141 3e-29 seq34854 140 1e-28 seq85 114 4e-21 seq31544 111 5e-20 seq151 111 5e-20 seq134 84.2 7e-12 >seq444 Length=4271 Score = 605 bits (670), Expect = 8e-169 Identities = 730/983 (74%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| || | ||||||||||| |||| |||||||| ||||||| Sbjct 1109 TAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1050 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || ||||| ||||||||||| ||||| |||| Sbjct 1049 CCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAG 991 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || |||||||| |||||||| || | Sbjct 990 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTA 931 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || ||| | || || |||||||| || Sbjct 930 TTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGATTGCATTTTTACCCAATCTG 873 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 ||||||| || ||||||||||||| |||||||| || || | |||| | || | Sbjct 872 GGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCT 813 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 ||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 812 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 753 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 752 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT 693 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | |||| || |||||||||| || || || |||| ||||||| | || |||| Sbjct 692 -TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 634 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| ||| | |||||||| || || || |||||||| |||||||| | Sbjct 633 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCAT 574 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | ||||| |||||||||||||| || || || || ||||| ||||| |||| Sbjct 573 TTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTT 514 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 513 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 455 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || |||||||||||||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 454 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 395 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || ||||| |||||||| ||| |||||||||| |||||| |||| |||||| | || Sbjct 394 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 335 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || |||||||| ||||| |||||||| |||| || || || ||| ||||| || || Sbjct 334 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 275 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| || | | || | | || ||||| ||| ||||| Sbjct 274 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 215 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| ||| | || |||||||| || || | || || ||||||||||| |||||| Sbjct 214 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 155 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 || |||||||| || ||||| || Sbjct 154 CACAACTTCCCTCTAGACCTAGC 132 >seq31551 Length=1713 Score = 266 bits (294), Expect = 1e-66 Identities = 320/430 (74%), Gaps = 9/430 (2%) Strand=Plus/Minus Query 20066 GGTGTA-TTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCT 20124 |||||| ||||| || || ||||||||||| ||||| ||||| | || || || | | | Sbjct 1156 GGTGTACTTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTT 1098 Query 20125 TGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAG 20183 || | | || || || ||| | ||| | || ||||||| || || ||||||| Sbjct 1097 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAG 1038 Query 20184 AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACG 20243 |||| || ||||| |||||||| ||||||||||| ||||| || |||||||||||||| | Sbjct 1037 AAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 978 Query 20244 CTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 20303 || | |||||||| ||||| |||| |||||||| ||||| ||||| || ||||| | Sbjct 977 CTAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTA 918 Query 20304 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTA 20363 | |||||| |||| || || || || ||||| ||| | | ||||||||||| || | Sbjct 917 TCTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCA 858 Query 20364 ACCAGTCCCTTCTCGA----CAA--CAATGGTCGTGTCATTGATACTTGGGCTGACATTC 20417 |||| || | | || ||| || |||| ||| ||| |||| |||||||| | Sbjct 857 ACCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCA 798 Query 20418 TCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCAC 20477 | || |||||||| || || | || || ||||||||||| ||||||||||||||||| | Sbjct 797 TTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCC 738 Query 20478 TTGACCTTGC 20487 | ||||| || Sbjct 737 TAGACCTAGC 728 >seq31730 Length=297 Score = 230 bits (254), Expect = 7e-56 Identities = 222/281 (79%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 19835 ATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCC 19894 ||||| || |||||||||||||| | || || || ||| | ||||||||| |||||| Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60 Query 19895 TACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGG 19953 || || ||||| |||||||| || |||| || ||||| | ||||||| ||||||| || Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGG 119 Query 19954 TAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATT 20013 || || || |||| ||||||| | || || || ||||| ||||||| |||| | ||||| Sbjct 120 AAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATT 179 Query 20014 CCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATT 20073 ||| || || || ||||| || |||||||| || |||||| | || || ||||||||||| Sbjct 180 CCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATT 239 Query 20074 CGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTA 20114 ||| || || ||||||||||| ||||| ||||| |||| || Sbjct 240 CGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTA 279 >seq31523 Length=225 Score = 176 bits (194), Expect = 1e-39 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || || ||||| ||||| || ||||| |||||||| ||||||||||| ||| Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 || || |||||||||||||| ||| |||||||||| |||||| ||||||||||||| Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341 ||||| ||||| || ||||| || |||||| |||| || || | || ||||| || Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 20342 AATCTGAACGGTTTCAACTT 20361 || || || |||||||| || Sbjct 205 AACCTAAATGGTTTCAATTT 224 >seq77 Length=8408033 Score = 143 bits (158), Expect = 8e-30 Identities = 216/305 (71%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 19610 TTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTT 19669 ||||| || ||||| ||| | || |||||||| || ||| |||| | ||| | || Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754 Query 19670 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 19727 |||||||||||||| || || || || ||| | |||| | | || || || || Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCA--GCTATAGGTT 2698812 Query 19728 TACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGAC 19787 | || | |||||||| | |||||| ||| ||||||||||| | |||||||| || | Sbjct 2698813 TGCATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTC 2698872 Query 19788 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGT 19847 | | | || | || | |||||| | |||| | | ||||||||| || |||| Sbjct 2698873 CTTATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGT 2698932 Query 19848 GGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGG 19907 |||||||||| | ||| ||||| ||| | |||||||| |||||| || || ||||| | Sbjct 2698933 GGGAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTG 2698992 Query 19908 TTGCA 19912 ||||| Sbjct 2698993 TTGCA 2698997 >seq203 Length=8626763 Score = 141 bits (156), Expect = 3e-29 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| |||| ||||||||| | || ||||| ||| | ||||||||| ||| Sbjct 3756519 TTACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGT 3756460 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || |||||||||||| | || |||| || ||||| | ||||||| |||||| Sbjct 3756459 TGCATATTCAGCTCCGGTTGCAACTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTC 3756401 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || || || | |||| ||||||| | || || || || | ||||| | |||| | | Sbjct 3756400 AAGGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTG 3756341 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCA 20049 |||||||||| || || ||||| || ||| | || || || Sbjct 3756340 TATTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCA 3756301 >seq34854 Length=328 Score = 140 bits (154), Expect = 1e-28 Identities = 203/282 (72%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 37 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 96 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || |||||||| |||||||| ||||| |||| Sbjct 97 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 155 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || |||||||||||||| || | Sbjct 156 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 215 Query 19689 TATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | ||||| ||| | |||| | | ||| || || || | || || |||||||| || Sbjct 216 TCTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATG 273 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACC 19788 |||||| || ||||||||||| | |||||||| || || Sbjct 274 GGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCC 315 >seq85 Length=5226098 Score = 114 bits (126), Expect = 4e-21 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 20330 ACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGT 20389 || ||||| || || || || |||||||| || ||||| ||| | | || | | ||| Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 1123285 Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATG 20449 ||||| ||| |||| |||| ||| ||| | ||| ||||||| || || | || || ||| Sbjct 1123284 CGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTTATG 1123225 Query 20450 CATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 |||||| | ||||||||||||||||| || ||||| || Sbjct 1123224 CATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187 >seq31544 Length=164 Score = 111 bits (122), Expect = 5e-20 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 |||||||| ||| |||| |||||||| ||| | |||||||||||||| || | || || Sbjct 23 GGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAATCTTGGTATGGAAGTT 82 Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||||||||| ||||||||||||||||| || ||||| || Sbjct 83 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 123 >seq151 Length=2833985 Score = 111 bits (122), Expect = 5e-20 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 20183 GAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATAC 20242 ||||| || ||||| |||||||| ||||||||||| ||||| || |||||||||| ||| Sbjct 2328018 GAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCTATAT 2328077 Query 20243 GCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 20286 ||| |||||||||| ||||| ||||||||||||| ||||| Sbjct 2328078 GCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAGCTGC 2328121 >seq134 Length=15115857 Score = 84.2 bits (92), Expect = 7e-12 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 20348 AACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGG 20407 || |||||| | || || || ||| | | || | | | |||||||| ||| ||| || Sbjct 3767265 AATGGTTTCTATTTCAATCAATCCATAGTTGATAGCCAAGGTCGTGTAATTAATATGCGG 3767206 Query 20408 GCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCAT 20467 | ||| ||| | ||| ||||||| || || | || || | |||||||| ||||||||| Sbjct 3767205 GGTGATATTATTAATTGTGCTAACCTTGGTATAGAAGTTACACATGAACGTAATGCTCAT 3767146 Query 20468 AACTTCCCACTTGACC 20483 |||||||| || |||| Sbjct 3767145 AACTTCCCTCTAGACC 3767130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148764511167408