Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq444 605 8e-169
seq31551 266 1e-66
seq31730 230 7e-56
seq31523 176 1e-39
seq77 143 8e-30
seq203 141 3e-29
seq34854 140 1e-28
seq85 114 4e-21
seq31544 111 5e-20
seq151 111 5e-20
seq134 84.2 7e-12
>seq444
Length=4271
Score = 605 bits (670), Expect = 8e-169
Identities = 730/983 (74%), Gaps = 10/983 (1%)
Strand=Plus/Minus
Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569
||||||| | ||| || | ||||||||||| |||| |||||||| |||||||
Sbjct 1109 TAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1050
Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAG 19628
|| | || ||| || | |||| || ||||| ||||||||||| ||||| ||||
Sbjct 1049 CCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAG 991
Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688
| || |||||||| || || ||||| || || || |||||||| |||||||| || |
Sbjct 990 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTA 931
Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746
| || || ||| | |||| | | ||| || || ||| | || || |||||||| ||
Sbjct 930 TTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGATTGCATTTTTACCCAATCTG 873
Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806
||||||| || ||||||||||||| |||||||| || || | |||| | || |
Sbjct 872 GGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCT 813
Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866
||||| | |||| | | ||| ||||| || |||||||||||||| | || ||
Sbjct 812 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 753
Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926
|| ||| | ||||||||| |||||| || || ||||| |||||||| || |||| ||
Sbjct 752 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT 693
Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985
||||| | |||| || |||||||||| || || || |||| ||||||| | || ||||
Sbjct 692 -TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCT 634
Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045
| ||||| ||||||| ||| | |||||||| || || || |||||||| |||||||| |
Sbjct 633 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCAT 574
Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105
| |||||| | ||||| |||||||||||||| || || || || ||||| ||||| ||||
Sbjct 573 TTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTT 514
Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164
| |||| || | || | ||| | | || || || ||| | ||| | || | |||
Sbjct 513 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 455
Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224
|||| || |||||||||||||| || || ||||| ||||| ||||| ||||| |||||
Sbjct 454 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 395
Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284
|| ||||| |||||||| ||| |||||||||| |||||| |||| |||||| | ||
Sbjct 394 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 335
Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344
|| |||||||| ||||| |||||||| |||| || || || ||| ||||| || ||
Sbjct 334 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 275
Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404
|| || |||||||| || ||||| || | | || | | || ||||| ||| |||||
Sbjct 274 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 215
Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464
|||||||| ||| | || |||||||| || || | || || ||||||||||| ||||||
Sbjct 214 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 155
Query 20465 CATAACTTCCCACTTGACCTTGC 20487
|| |||||||| || ||||| ||
Sbjct 154 CACAACTTCCCTCTAGACCTAGC 132
>seq31551
Length=1713
Score = 266 bits (294), Expect = 1e-66
Identities = 320/430 (74%), Gaps = 9/430 (2%)
Strand=Plus/Minus
Query 20066 GGTGTA-TTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCT 20124
|||||| ||||| || || ||||||||||| ||||| ||||| | || || || | | |
Sbjct 1156 GGTGTACTTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTT 1098
Query 20125 TGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAG 20183
|| | | || || || ||| | ||| | || ||||||| || || |||||||
Sbjct 1097 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAG 1038
Query 20184 AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACG 20243
|||| || ||||| |||||||| ||||||||||| ||||| || |||||||||||||| |
Sbjct 1037 AAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 978
Query 20244 CTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 20303
|| | |||||||| ||||| |||| |||||||| ||||| ||||| || ||||| |
Sbjct 977 CTAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTA 918
Query 20304 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTA 20363
| |||||| |||| || || || || ||||| ||| | | ||||||||||| || |
Sbjct 917 TCTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCA 858
Query 20364 ACCAGTCCCTTCTCGA----CAA--CAATGGTCGTGTCATTGATACTTGGGCTGACATTC 20417
|||| || | | || ||| || |||| ||| ||| |||| |||||||| |
Sbjct 857 ACCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCA 798
Query 20418 TCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCAC 20477
| || |||||||| || || | || || ||||||||||| ||||||||||||||||| |
Sbjct 797 TTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCC 738
Query 20478 TTGACCTTGC 20487
| ||||| ||
Sbjct 737 TAGACCTAGC 728
>seq31730
Length=297
Score = 230 bits (254), Expect = 7e-56
Identities = 222/281 (79%), Gaps = 3/281 (1%)
Strand=Plus/Plus
Query 19835 ATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCC 19894
||||| || |||||||||||||| | || || || ||| | ||||||||| ||||||
Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60
Query 19895 TACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGG 19953
|| || ||||| |||||||| || |||| || ||||| | ||||||| ||||||| ||
Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGG 119
Query 19954 TAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATT 20013
|| || || |||| ||||||| | || || || ||||| ||||||| |||| | |||||
Sbjct 120 AAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATT 179
Query 20014 CCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATT 20073
||| || || || ||||| || |||||||| || |||||| | || || |||||||||||
Sbjct 180 CCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATT 239
Query 20074 CGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTA 20114
||| || || ||||||||||| ||||| ||||| |||| ||
Sbjct 240 CGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTA 279
>seq31523
Length=225
Score = 176 bits (194), Expect = 1e-39
Identities = 159/200 (80%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221
||||||| || || ||||| ||||| || ||||| |||||||| ||||||||||| |||
Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84
Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281
|| || |||||||||||||| ||| |||||||||| |||||| |||||||||||||
Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144
Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341
||||| ||||| || ||||| || |||||| |||| || || | || ||||| ||
Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204
Query 20342 AATCTGAACGGTTTCAACTT 20361
|| || || |||||||| ||
Sbjct 205 AACCTAAATGGTTTCAATTT 224
>seq77
Length=8408033
Score = 143 bits (158), Expect = 8e-30
Identities = 216/305 (71%), Gaps = 4/305 (1%)
Strand=Plus/Plus
Query 19610 TTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTT 19669
||||| || ||||| ||| | || |||||||| || ||| |||| | ||| | ||
Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754
Query 19670 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 19727
|||||||||||||| || || || || ||| | |||| | | || || || ||
Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCA--GCTATAGGTT 2698812
Query 19728 TACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGAC 19787
| || | |||||||| | |||||| ||| ||||||||||| | |||||||| || |
Sbjct 2698813 TGCATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTC 2698872
Query 19788 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGT 19847
| | | || | || | |||||| | |||| | | ||||||||| || ||||
Sbjct 2698873 CTTATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGT 2698932
Query 19848 GGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGG 19907
|||||||||| | ||| ||||| ||| | |||||||| |||||| || || ||||| |
Sbjct 2698933 GGGAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTG 2698992
Query 19908 TTGCA 19912
|||||
Sbjct 2698993 TTGCA 2698997
>seq203
Length=8626763
Score = 141 bits (156), Expect = 3e-29
Identities = 165/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890
||||||||| |||| ||||||||| | || ||||| ||| | ||||||||| |||
Sbjct 3756519 TTACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGT 3756460
Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949
||| || || |||||||||||| | || |||| || ||||| | ||||||| ||||||
Sbjct 3756459 TGCATATTCAGCTCCGGTTGCAACTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTC 3756401
Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009
| || || || | |||| ||||||| | || || || || | ||||| | |||| | |
Sbjct 3756400 AAGGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTG 3756341
Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCA 20049
|||||||||| || || ||||| || ||| | || || ||
Sbjct 3756340 TATTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCA 3756301
>seq34854
Length=328
Score = 140 bits (154), Expect = 1e-28
Identities = 203/282 (72%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569
||||||| | || ||| | ||||||||||| |||| |||||||| |||||||
Sbjct 37 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 96
Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628
|| | || ||| || | |||| || |||||||| |||||||| ||||| ||||
Sbjct 97 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 155
Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688
| || |||||||| || || ||||| || || || || |||||||||||||| || |
Sbjct 156 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 215
Query 19689 TATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746
| ||||| ||| | |||| | | ||| || || || | || || |||||||| ||
Sbjct 216 TCTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATG 273
Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACC 19788
|||||| || ||||||||||| | |||||||| || ||
Sbjct 274 GGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCC 315
>seq85
Length=5226098
Score = 114 bits (126), Expect = 4e-21
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 20330 ACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGT 20389
|| ||||| || || || || |||||||| || ||||| ||| | | || | | |||
Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 1123285
Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATG 20449
||||| ||| |||| |||| ||| ||| | ||| ||||||| || || | || || |||
Sbjct 1123284 CGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTTATG 1123225
Query 20450 CATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487
|||||| | ||||||||||||||||| || ||||| ||
Sbjct 1123224 CATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187
>seq31544
Length=164
Score = 111 bits (122), Expect = 5e-20
Identities = 85/101 (84%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446
|||||||| ||| |||| |||||||| ||| | |||||||||||||| || | || ||
Sbjct 23 GGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAATCTTGGTATGGAAGTT 82
Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487
||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 83 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 123
>seq151
Length=2833985
Score = 111 bits (122), Expect = 5e-20
Identities = 87/104 (84%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 20183 GAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATAC 20242
||||| || ||||| |||||||| ||||||||||| ||||| || |||||||||| |||
Sbjct 2328018 GAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCTATAT 2328077
Query 20243 GCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 20286
||| |||||||||| ||||| ||||||||||||| |||||
Sbjct 2328078 GCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAGCTGC 2328121
>seq134
Length=15115857
Score = 84.2 bits (92), Expect = 7e-12
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 20348 AACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGG 20407
|| |||||| | || || || ||| | | || | | | |||||||| ||| ||| ||
Sbjct 3767265 AATGGTTTCTATTTCAATCAATCCATAGTTGATAGCCAAGGTCGTGTAATTAATATGCGG 3767206
Query 20408 GCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCAT 20467
| ||| ||| | ||| ||||||| || || | || || | |||||||| |||||||||
Sbjct 3767205 GGTGATATTATTAATTGTGCTAACCTTGGTATAGAAGTTACACATGAACGTAATGCTCAT 3767146
Query 20468 AACTTCCCACTTGACC 20483
|||||||| || ||||
Sbjct 3767145 AACTTCCCTCTAGACC 3767130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148764511167408
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