Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq444 567 2e-157 seq31551 262 1e-65 seq31730 208 2e-49 seq31523 172 2e-38 seq34854 140 1e-28 seq77 140 1e-28 seq85 114 4e-21 seq151 111 5e-20 seq31544 107 6e-19 seq134 82.4 2e-11 >seq444 Length=4271 Score = 567 bits (628), Expect = 2e-157 Identities = 720/983 (73%), Gaps = 8/983 (1%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | ||| || | ||||||||||| |||| |||||||| ||||||| Sbjct 1109 TAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1050 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | |||| || ||||| ||||||||||| || || |||| Sbjct 1049 CCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAG 991 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| ||||| |||||| || |||||||| || | Sbjct 990 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTA 931 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || ||| | | || | | ||| || || ||| | || || |||||||| || Sbjct 930 TTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGATTGCATTTTTACCCAATCTG 873 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 ||||||| || ||||||||||||| |||||||| || || | |||| | || | Sbjct 872 GGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCT 813 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 ||||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 812 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 753 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| || Sbjct 752 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT 693 Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTC 29114 |||| | |||| ||| | ||||| || |||| || | |||||| | || || || Sbjct 692 TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 633 Query 29115 AGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 || || ||||||| ||| | || ||||| || || || |||||||| |||||||| || Sbjct 632 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 573 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 |||||| | || || ||||| || ||||| ||||| || |||||||| ||||| ||||| Sbjct 572 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTC 513 Query 29235 GCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTT 29293 | || || || | | ||| | | || || || ||| | ||| || | |||| Sbjct 512 CTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 454 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGAC 29353 ||| || || ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| | Sbjct 453 ACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCC 394 Query 29354 GTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTG 29413 | ||||| |||||||||||| |||||| ||| |||||| |||| |||||| | || | Sbjct 393 GATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGG 334 Query 29414 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 29473 | |||||||| ||||| |||||||| |||| || || || ||| ||||| || || | Sbjct 333 CTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 274 Query 29474 TGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTT 29533 | || ||||| || || ||||| || | | || | | || ||||| |||||||||| Sbjct 273 TAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTT 214 Query 29534 GGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTC 29593 |||||||| || | || || |||||||| || | ||||| |||||||| |||||||||| Sbjct 213 GGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 154 Query 29594 ATAACTTCCCACTTGATCTGGCT 29616 | |||||||| || || || ||| Sbjct 153 ACAACTTCCCTCTAGACCTAGCT 131 >seq31551 Length=1713 Score = 262 bits (290), Expect = 1e-65 Identities = 315/424 (74%), Gaps = 8/424 (2%) Strand=Plus/Minus Query 29200 TTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-G 29258 ||||| ||||| ||||| ||||| ||||| ||||| | || || || | | ||| | | Sbjct 1149 TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAG 1091 Query 29259 TGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGAC 29318 || || || ||| | ||| || ||||||| || || ||||||||||| || Sbjct 1090 GGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAAC 1031 Query 29319 TTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTT 29378 |||||| |||||||| ||||| ||||| ||||| || |||||||||||||||||| | | Sbjct 1030 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTGT 971 Query 29379 CAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTT 29438 ||| ||| ||||| |||| |||||||| ||||| ||||| || ||||| || ||||| Sbjct 970 CAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 911 Query 29439 CGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA--- 29495 | |||| || || || || ||||| ||| | | |||||||| || || ||||| Sbjct 910 CACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATC 851 Query 29496 -GTCGCTTCTCGACAA--CAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCG 29552 || | | | | ||| || |||| ||| |||||||| ||||||||| | | || || Sbjct 850 TGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCATTAACCG 791 Query 29553 CGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCT 29612 |||||||| || | ||||| |||||||| |||||||||||||||||||| || || || Sbjct 790 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCTAGACCT 731 Query 29613 GGCT 29616 ||| Sbjct 730 AGCT 727 >seq31730 Length=297 Score = 208 bits (230), Expect = 2e-49 Identities = 213/277 (77%), Gaps = 1/277 (0%) Strand=Plus/Plus Query 28963 ATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCA 29022 ||||| || |||||||||||||| | || || || ||| | || |||||| ||| ||| Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60 Query 29023 TACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGT 29082 || |||||||| || ||||| || |||| |||||| | |||||||| | |||||||| Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 120 Query 29083 TCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTC 29142 |||| || | |||||| | || ||||| || || ||||||| |||| | || ||| Sbjct 121 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 180 Query 29143 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTC 29202 || || || || ||||| || |||||||| || |||||| | ||||| ||||| || ||| Sbjct 181 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 240 Query 29203 GGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTG 29239 || ||||| ||||| ||||| ||||| ||||| |||| Sbjct 241 GGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTG 276 >seq31523 Length=225 Score = 172 bits (190), Expect = 2e-38 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || || ||||| ||||| |||||||| |||||||| ||||| ||||| ||| Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || || |||||||||||||||||| |||||| ||| |||||| ||||||||||||| Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 ||||| ||||| || ||||| || |||||| |||| || || | || ||||| || Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 29470 AATCTGAACGGTTTTAACTT 29489 || || || ||||| || || Sbjct 205 AACCTAAATGGTTTCAATTT 224 >seq34854 Length=328 Score = 140 bits (154), Expect = 1e-28 Identities = 203/282 (72%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 37 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 96 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | |||| || |||||||| |||||||| || || |||| Sbjct 97 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 155 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| ||||| ||| || ||||||||||| || | Sbjct 156 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 215 Query 28817 TATCGGGAGCCGTCGTACCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | ||||| ||| | | || | | ||| || || || | || || |||||||| || Sbjct 216 TCTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATG 273 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 28916 |||||| || ||||||||||| | |||||||| || || Sbjct 274 GGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCC 315 >seq77 Length=8408033 Score = 140 bits (154), Expect = 1e-28 Identities = 238/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 28738 TTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTT 28797 ||||| || || || ||| | || |||||||| || ||| ||||| | | || ||| Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754 Query 28798 CTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGAC 28855 || ||||||||||| || || || || ||| | | || | | || || || || Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCA--GCTATAGGTT 2698812 Query 28856 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 28915 | || | |||||||| | |||||| ||| ||||||||||| | |||||||| || | Sbjct 2698813 TGCATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTC 2698872 Query 28916 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 28975 | | | || | || | |||||| | |||| || | ||||||||| || |||| Sbjct 2698873 CTTATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGT 2698932 Query 28976 GGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCG 29035 |||||||||| | ||| ||||| ||| | | |||||| ||| ||||| |||||||| | Sbjct 2698933 GGGAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTG 2698992 Query 29036 TCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 | ||| || | |||||| | |||||||| | ||||| Sbjct 2698993 TTGCAATTGCTATTATTGTTTTCTTGATCTACCCAATTGGTCA 2699035 >seq85 Length=5226098 Score = 114 bits (126), Expect = 4e-21 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29458 ACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGT 29517 || ||||| || || || || ||||| || || ||||| || | | || | | ||| Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 1123285 Query 29518 CGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATG 29577 ||||| |||||||| |||| |||| || | ||| | |||||||| || | ||||| ||| Sbjct 1123284 CGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTTATG 1123225 Query 29578 CATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCTAC 29618 ||||| ||||||||||||||||||| || || || ||||| Sbjct 1123224 CATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTAC 1123184 >seq151 Length=2833985 Score = 111 bits (122), Expect = 5e-20 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 29311 GAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATAT 29370 ||||| |||||||| |||||||| ||||| ||||| ||||| || |||||||||| |||| Sbjct 2328018 GAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCTATAT 2328077 Query 29371 GCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 29414 ||| |||||| ||| ||||| ||||||||||||| ||||| Sbjct 2328078 GCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAGCTGC 2328121 >seq31544 Length=164 Score = 107 bits (118), Expect = 6e-19 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| |||||||| ||||||||| || | ||||| ||||| || || | ||||| Sbjct 23 GGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAATCTTGGTATGGAAGTT 82 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||| |||||||||||||||||||| || || || ||| Sbjct 83 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 124 >seq134 Length=15115857 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| ||||||| ||| |||| || | ||| | |||||||| || | ||||| Sbjct 3767226 GGTCGTGTAATTAATATGCGGGGTGATATTATTAATTGTGCTAACCTTGGTATAGAAGTT 3767167 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 | ||||| |||||||||||||||||||| || || Sbjct 3767166 ACACATGAACGTAATGCTCATAACTTCCCTCTAGA 3767132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146602245594096