Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq444 627 2e-175
seq31730 244 3e-60
seq31551 232 2e-56
seq34854 176 1e-39
seq77 165 2e-36
seq203 143 8e-30
seq31523 136 1e-27
seq85 129 2e-25
seq31544 100 8e-17
seq134 87.8 5e-13
>seq444
Length=4271
Score = 627 bits (694), Expect = 2e-175
Identities = 732/981 (75%), Gaps = 8/981 (1%)
Strand=Plus/Minus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| ||||| |||| || || || ||||||||||| || || |||||||| ||
Sbjct 1114 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1055
Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842
||||| || | || ||| | || ||| | ||| ||||| || ||||||||||| ||
Sbjct 1054 ATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCC 996
Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902
||| ||||| |||||||| || || || |||||| | || ||||||||| ||||||||
Sbjct 995 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 936
Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960
|| || || || ||| | |||| | | ||| || || ||| | || || ||||||
Sbjct 935 TATTATTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGATTGCATTTTTACCCA 878
Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020
|| ||||||||| || ||||||||||||| |||||||| || || | |||| |
Sbjct 877 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 818
Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080
|| | ||||| | |||| || | ||| ||||| || |||||||||||||| |
Sbjct 817 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 758
Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140
|| || || ||||| ||||||||| |||||| || |||||||||||||| || || ||
Sbjct 757 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACT 698
Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200
|| || ||| | |||||||| ||||||| || ||| || | ||||||| | ||
Sbjct 697 GCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGA 638
Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260
|| |||||| ||||||| ||| |||||||||||||||| || ||||| || ||||||
Sbjct 637 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 578
Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320
|| || |||||| | ||||| |||||||| |||||||| || || |||||||| |||||
Sbjct 577 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCAT 518
Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379
||||| |||| || | || | ||| | | ||||| || ||| | | |||| || |
Sbjct 517 GGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 459
Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439
|| |||| || |||||||||||||| ||||| |||||||| |||||||| || |||||
Sbjct 458 AGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTT 399
Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499
||| || | |||||||| || || ||||||||| |||||| |||||||||| ||
Sbjct 398 TGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 339
Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559
|| |||||||| || || || ||||||||| | || | || | || || ||||| ||
Sbjct 338 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTT 279
Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619
|||| | ||||| || || || ||||| || | |||| | | || ||||| ||| |
Sbjct 278 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 219
Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679
|||||||||||| ||| | || ||||||||||| || | || || ||||| ||||||||
Sbjct 218 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 159
Query 19680 TGCTCATAACTTCCCACTTGA 19700
|||||| |||||||| || ||
Sbjct 158 TGCTCACAACTTCCCTCTAGA 138
>seq31730
Length=297
Score = 244 bits (270), Expect = 3e-60
Identities = 223/280 (80%), Gaps = 1/280 (0%)
Strand=Plus/Plus
Query 19054 ATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCC 19113
||||| || |||||||||||||| | || || || ||||||||||||||| ||||||
Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60
Query 19114 TACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGT 19173
|| |||||||||||||| || || |||| || ||| | |||| ||| ||||||||||
Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 120
Query 19174 TCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTC 19233
||| || | ||||||| | || ||| |||||| ||||||| |||| ||||||||
Sbjct 121 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 180
Query 19234 CAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTC 19293
|||||||| || |||||||| |||||||| || |||||| | || || |||||||| |||
Sbjct 181 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 240
Query 19294 GGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTA 19333
||||| || ||||| ||||| ||||| ||||| |||| ||
Sbjct 241 GGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTA 279
>seq31551
Length=1713
Score = 232 bits (256), Expect = 2e-56
Identities = 304/417 (73%), Gaps = 8/417 (2%)
Strand=Plus/Minus
Query 19291 TTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-G 19349
|||||||| || ||||| ||||| ||||| ||||| | || || || | | ||| | |
Sbjct 1149 TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAG 1091
Query 19350 TGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGAC 19409
||||| || ||| | | |||| || || |||| || || ||||||||||| ||
Sbjct 1090 GGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAAC 1031
Query 19410 TTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTT 19469
|||||| || || ||||||||||| |||||||| || | || ||||| || || |
Sbjct 1030 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTGT 971
Query 19470 CAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTT 19529
||||||| ||||| |||||||||| | |||||||||||||| || || || |||||
Sbjct 970 CAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 911
Query 19530 TGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTC 19589
| || | || | ||||||||||| || |||| || || || || || ||||| ||
Sbjct 910 CACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATC 851
Query 19590 CCTTCTTGA----CAA--CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCG 19643
| |||| ||| || |||| ||| ||| |||| |||||||| | | || ||
Sbjct 850 TGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCATTAACCG 791
Query 19644 TGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700
||||||||| || | || || ||||| ||||||||||||||||||||||| || ||
Sbjct 790 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCTAGA 734
>seq34854
Length=328
Score = 176 bits (194), Expect = 1e-39
Identities = 216/288 (75%), Gaps = 8/288 (3%)
Strand=Plus/Plus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| ||||| ||||||| || || ||||||||||| || || |||||||| ||
Sbjct 32 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 91
Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841
||||| || | || ||| | || ||| | ||| || |||||||||||||||||||| |
Sbjct 92 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 149
Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901
|||| ||||| |||||||| || || || |||||| | || ||| |||||||||||||
Sbjct 150 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 209
Query 18902 ACATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCC 18959
| || || ||||| ||| | |||| | | ||| || || || | || || |||||
Sbjct 210 ATATTATCTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCC 267
Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 19007
||| |||||||| || ||||||||||| | |||||||| || ||
Sbjct 268 AATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCC 315
>seq77
Length=8408033
Score = 165 bits (182), Expect = 2e-36
Identities = 220/304 (72%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 18829 TTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTT 18888
||||| ||||| ||||| |||| |||||||| || ||| | ||| || | | |||
Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754
Query 18889 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 18946
|||||||||||||| || || || || ||| | |||| | | || || || ||
Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCA--GCTATAGGTT 2698812
Query 18947 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 19006
| || | |||||||| | |||||| ||| ||||||||||| | |||||||| || |
Sbjct 2698813 TGCATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTC 2698872
Query 19007 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 19066
| | | || | || | |||||| | |||| || | ||||||||| || ||||
Sbjct 2698873 CTTATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGT 2698932
Query 19067 GGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTG 19126
|||||||||| | ||| ||||| ||| || |||||||| |||||| || ||||||||||
Sbjct 2698933 GGGAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTG 2698992
Query 19127 TTGC 19130
||||
Sbjct 2698993 TTGC 2698996
>seq203
Length=8626763
Score = 143 bits (158), Expect = 8e-30
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109
||||||||| |||| ||||||||| | || ||||| ||||||||||||||| |||
Sbjct 3756519 TTACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGT 3756460
Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCA 19169
||| || |||||||| ||||| | || |||| || ||| | |||| ||| |||||||
Sbjct 3756459 TGCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCA 3756400
Query 19170 AGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGT 19229
||| ||| || | ||||||| | || ||| || | ||||| | |||| ||||
Sbjct 3756399 AGGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGT 3756340
Query 19230 ATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCA 19268
|||||| ||||| || |||||||| ||| | || || ||
Sbjct 3756339 ATTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCA 3756301
>seq31523
Length=225
Score = 136 bits (150), Expect = 1e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440
|| |||| || || ||||| ||||| |||||||| || || ||||||||||| ||||||
Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84
Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500
|| || | || ||||| || || ||||||||| |||||| |||| ||||| |
Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144
Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560
|||||||||||||| || || || ||||| | || | || | ||||| ||||| |||
Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204
Query 19561 AACTTGAATGGCTTTAACTT 19580
||| | ||||| || || ||
Sbjct 205 AACCTAAATGGTTTCAATTT 224
>seq85
Length=5226098
Score = 129 bits (142), Expect = 2e-25
Identities = 134/175 (77%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 19537 CTTGGGGTA--AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTC 19594
|||| |||| ||||| ||||| |||||| | ||||| || || || ||||| ||| |
Sbjct 1123358 CTTGTGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAG 1123299
Query 19595 TTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCG 19654
|||| | | |||||||| ||| |||| |||| ||| ||| | ||| |||||||||| |
Sbjct 1123298 TTGATAGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTG 1123239
Query 19655 GCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCTAC 19709
| | || || ||||| ||| ||||||||||||||||||| || || | |||||
Sbjct 1123238 GTATGGAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTAC 1123184
>seq31544
Length=164
Score = 100 bits (110), Expect = 8e-17
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665
|||||||| ||| |||| |||||||| ||| | ||||||||||| || || | || ||
Sbjct 23 GGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAATCTTGGTATGGAAGTT 82
Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700
||||| ||||||||||||||||||||||| || ||
Sbjct 83 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 117
>seq134
Length=15115857
Score = 87.8 bits (96), Expect = 5e-13
Identities = 141/200 (71%), Gaps = 7/200 (4%)
Strand=Plus/Minus
Query 18803 CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCA 18862
||||| |||| | | |||||||||||||||| ||| ||||| || || |||||||| |
Sbjct 3765962 CAGCTTCTATATTT---ATTATTGCCTTCATTGTTGCTCCTCCAGTTGATATTGATGGTA 3765906
Query 18863 TCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCG 18922
|| | ||||| || | || ||| |||||||| ||||| || || | | | | |
Sbjct 3765905 TCTGTAAGCCTATTTCTGGATCTCTACTTTATGGTAACAATATTATTTATGATGGCATTA 3765846
Query 18923 TTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACT 18980
|||| | | ||| | || || | || || ||| |||| |||||||| || |
Sbjct 3765845 TTCCTACTCCTACAA--CTATAGGTTTGCATTTTTACTCAATATGGGAAGCAGCATCTGT 3765788
Query 18981 TGATGAATGGCTCTACAACG 19000
|||||||||| | |||||||
Sbjct 3765787 TGATGAATGGTTATACAACG 3765768
Score = 84.2 bits (92), Expect = 6e-12
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 19567 AATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGG 19626
||||| || | || || || ||| | |||| | | | |||||||| ||| ||| ||
Sbjct 3767265 AATGGTTTCTATTTCAATCAATCCATAGTTGATAGCCAAGGTCGTGTAATTAATATGCGG 3767206
Query 19627 GCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCAT 19686
| ||| ||| | ||| |||||||||| || | || || | || |||||||||||||||
Sbjct 3767205 GGTGATATTATTAATTGTGCTAACCTTGGTATAGAAGTTACACATGAACGTAATGCTCAT 3767146
Query 19687 AACTTCCCACTTGA 19700
|||||||| || ||
Sbjct 3767145 AACTTCCCTCTAGA 3767132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 141087828658608
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