Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq444 627 2e-175 seq31730 244 3e-60 seq31551 232 2e-56 seq34854 176 1e-39 seq77 165 2e-36 seq203 143 8e-30 seq31523 136 1e-27 seq85 129 2e-25 seq31544 100 8e-17 seq134 87.8 5e-13 >seq444 Length=4271 Score = 627 bits (694), Expect = 2e-175 Identities = 732/981 (75%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| |||| || || || ||||||||||| || || |||||||| || Sbjct 1114 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1055 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | || ||| | || ||| | ||| ||||| || ||||||||||| || Sbjct 1054 ATGATCCC-TACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCC 996 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || ||||||||| |||||||| Sbjct 995 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 936 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | |||| | | ||| || || ||| | || || |||||| Sbjct 935 TATTATTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGATTGCATTTTTACCCA 878 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || ||||||||| || ||||||||||||| |||||||| || || | |||| | Sbjct 877 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 818 Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 || | ||||| | |||| || | ||| ||||| || |||||||||||||| | Sbjct 817 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 758 Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140 || || || ||||| ||||||||| |||||| || |||||||||||||| || || || Sbjct 757 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACT 698 Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200 || || ||| | |||||||| ||||||| || ||| || | ||||||| | || Sbjct 697 GCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGA 638 Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260 || |||||| ||||||| ||| |||||||||||||||| || ||||| || |||||| Sbjct 637 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 578 Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 || || |||||| | ||||| |||||||| |||||||| || || |||||||| ||||| Sbjct 577 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCAT 518 Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| || | Sbjct 517 GGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 459 Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 || |||| || |||||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct 458 AGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTT 399 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 ||| || | |||||||| || || ||||||||| |||||| |||||||||| || Sbjct 398 TGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 339 Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559 || |||||||| || || || ||||||||| | || | || | || || ||||| || Sbjct 338 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTT 279 Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619 |||| | ||||| || || || ||||| || | |||| | | || ||||| ||| | Sbjct 278 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 219 Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679 |||||||||||| ||| | || ||||||||||| || | || || ||||| |||||||| Sbjct 218 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 159 Query 19680 TGCTCATAACTTCCCACTTGA 19700 |||||| |||||||| || || Sbjct 158 TGCTCACAACTTCCCTCTAGA 138 >seq31730 Length=297 Score = 244 bits (270), Expect = 3e-60 Identities = 223/280 (80%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 19054 ATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCC 19113 ||||| || |||||||||||||| | || || || ||||||||||||||| |||||| Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60 Query 19114 TACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGT 19173 || |||||||||||||| || || |||| || ||| | |||| ||| |||||||||| Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 120 Query 19174 TCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTC 19233 ||| || | ||||||| | || ||| |||||| ||||||| |||| |||||||| Sbjct 121 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 180 Query 19234 CAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTC 19293 |||||||| || |||||||| |||||||| || |||||| | || || |||||||| ||| Sbjct 181 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 240 Query 19294 GGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTA 19333 ||||| || ||||| ||||| ||||| ||||| |||| || Sbjct 241 GGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTA 279 >seq31551 Length=1713 Score = 232 bits (256), Expect = 2e-56 Identities = 304/417 (73%), Gaps = 8/417 (2%) Strand=Plus/Minus Query 19291 TTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-G 19349 |||||||| || ||||| ||||| ||||| ||||| | || || || | | ||| | | Sbjct 1149 TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAG 1091 Query 19350 TGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGAC 19409 ||||| || ||| | | |||| || || |||| || || ||||||||||| || Sbjct 1090 GGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAAC 1031 Query 19410 TTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTT 19469 |||||| || || ||||||||||| |||||||| || | || ||||| || || | Sbjct 1030 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTGT 971 Query 19470 CAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTT 19529 ||||||| ||||| |||||||||| | |||||||||||||| || || || ||||| Sbjct 970 CAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 911 Query 19530 TGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTC 19589 | || | || | ||||||||||| || |||| || || || || || ||||| || Sbjct 910 CACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATC 851 Query 19590 CCTTCTTGA----CAA--CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCG 19643 | |||| ||| || |||| ||| ||| |||| |||||||| | | || || Sbjct 850 TGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCATTAACCG 791 Query 19644 TGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||||||| || | || || ||||| ||||||||||||||||||||||| || || Sbjct 790 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCTAGA 734 >seq34854 Length=328 Score = 176 bits (194), Expect = 1e-39 Identities = 216/288 (75%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 32 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 91 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || |||||||||||||||||||| | Sbjct 92 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 149 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||||||||||| Sbjct 150 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 209 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || ||||| ||| | |||| | | ||| || || || | || || ||||| Sbjct 210 ATATTATCTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCC 267 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 19007 ||| |||||||| || ||||||||||| | |||||||| || || Sbjct 268 AATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCC 315 >seq77 Length=8408033 Score = 165 bits (182), Expect = 2e-36 Identities = 220/304 (72%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 18829 TTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTT 18888 ||||| ||||| ||||| |||| |||||||| || ||| | ||| || | | ||| Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754 Query 18889 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 18946 |||||||||||||| || || || || ||| | |||| | | || || || || Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCA--GCTATAGGTT 2698812 Query 18947 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 19006 | || | |||||||| | |||||| ||| ||||||||||| | |||||||| || | Sbjct 2698813 TGCATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTC 2698872 Query 19007 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 19066 | | | || | || | |||||| | |||| || | ||||||||| || |||| Sbjct 2698873 CTTATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGT 2698932 Query 19067 GGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTG 19126 |||||||||| | ||| ||||| ||| || |||||||| |||||| || |||||||||| Sbjct 2698933 GGGAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTG 2698992 Query 19127 TTGC 19130 |||| Sbjct 2698993 TTGC 2698996 >seq203 Length=8626763 Score = 143 bits (158), Expect = 8e-30 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109 ||||||||| |||| ||||||||| | || ||||| ||||||||||||||| ||| Sbjct 3756519 TTACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGT 3756460 Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCA 19169 ||| || |||||||| ||||| | || |||| || ||| | |||| ||| ||||||| Sbjct 3756459 TGCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCA 3756400 Query 19170 AGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGT 19229 ||| ||| || | ||||||| | || ||| || | ||||| | |||| |||| Sbjct 3756399 AGGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGT 3756340 Query 19230 ATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCA 19268 |||||| ||||| || |||||||| ||| | || || || Sbjct 3756339 ATTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCA 3756301 >seq31523 Length=225 Score = 136 bits (150), Expect = 1e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || |||| || || ||||| ||||| |||||||| || || ||||||||||| |||||| Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500 || || | || ||||| || || ||||||||| |||||| |||| ||||| | Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 |||||||||||||| || || || ||||| | || | || | ||||| ||||| ||| Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 19561 AACTTGAATGGCTTTAACTT 19580 ||| | ||||| || || || Sbjct 205 AACCTAAATGGTTTCAATTT 224 >seq85 Length=5226098 Score = 129 bits (142), Expect = 2e-25 Identities = 134/175 (77%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 19537 CTTGGGGTA--AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTC 19594 |||| |||| ||||| ||||| |||||| | ||||| || || || ||||| ||| | Sbjct 1123358 CTTGTGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAG 1123299 Query 19595 TTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCG 19654 |||| | | |||||||| ||| |||| |||| ||| ||| | ||| |||||||||| | Sbjct 1123298 TTGATAGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTG 1123239 Query 19655 GCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCTAC 19709 | | || || ||||| ||| ||||||||||||||||||| || || | ||||| Sbjct 1123238 GTATGGAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTAC 1123184 >seq31544 Length=164 Score = 100 bits (110), Expect = 8e-17 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| ||| |||| |||||||| ||| | ||||||||||| || || | || || Sbjct 23 GGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAATCTTGGTATGGAAGTT 82 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||| ||||||||||||||||||||||| || || Sbjct 83 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 117 >seq134 Length=15115857 Score = 87.8 bits (96), Expect = 5e-13 Identities = 141/200 (71%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 18803 CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCA 18862 ||||| |||| | | |||||||||||||||| ||| ||||| || || |||||||| | Sbjct 3765962 CAGCTTCTATATTT---ATTATTGCCTTCATTGTTGCTCCTCCAGTTGATATTGATGGTA 3765906 Query 18863 TCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCG 18922 || | ||||| || | || ||| |||||||| ||||| || || | | | | | Sbjct 3765905 TCTGTAAGCCTATTTCTGGATCTCTACTTTATGGTAACAATATTATTTATGATGGCATTA 3765846 Query 18923 TTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACT 18980 |||| | | ||| | || || | || || ||| |||| |||||||| || | Sbjct 3765845 TTCCTACTCCTACAA--CTATAGGTTTGCATTTTTACTCAATATGGGAAGCAGCATCTGT 3765788 Query 18981 TGATGAATGGCTCTACAACG 19000 |||||||||| | ||||||| Sbjct 3765787 TGATGAATGGTTATACAACG 3765768 Score = 84.2 bits (92), Expect = 6e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 19567 AATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGG 19626 ||||| || | || || || ||| | |||| | | | |||||||| ||| ||| || Sbjct 3767265 AATGGTTTCTATTTCAATCAATCCATAGTTGATAGCCAAGGTCGTGTAATTAATATGCGG 3767206 Query 19627 GCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCAT 19686 | ||| ||| | ||| |||||||||| || | || || | || ||||||||||||||| Sbjct 3767205 GGTGATATTATTAATTGTGCTAACCTTGGTATAGAAGTTACACATGAACGTAATGCTCAT 3767146 Query 19687 AACTTCCCACTTGA 19700 |||||||| || || Sbjct 3767145 AACTTCCCTCTAGA 3767132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141087828658608