Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq49 100 2e-16
seq652 91.5 1e-13
>seq49
Length=4798478
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||| ||||| || || | ||||| || || || || ||||| || |
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
|| || | | | | || ||| ||||||| |||||||||||| | ||| |||||
Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATCA 2870032
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|| |||||||||| ||| || ||||| |||||||| || ||| ||| ||||| ||
Sbjct 2870033 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATAA 2870092
Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468
||| || ||||| || || || || || ||
Sbjct 2870093 CATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||||||||| || || | ||||| || || || || ||||| || |
Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
|| | | | | | || ||| |||||| ||||| |||||| | ||| |||||
Sbjct 2840917 TGACACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2840976
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|| |||||||||| ||| || ||||| |||||||| || ||| ||| ||||||||
Sbjct 2840977 GCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2841036
Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468
||| || ||||| || || || || || ||
Sbjct 2841037 CATCCAGAAAGAGTCCACTCTTCACTTGGT 2841066
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||||||||| || || | ||||| || || || || ||||| || |
Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
|| | | | | | || ||| ||||||| ||||| |||||| | ||| |||||
Sbjct 2846905 TGACACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2846964
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|| |||||||||| ||| || ||||| |||||||| || ||| ||| ||||||||
Sbjct 2846965 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2847024
Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468
||| || || || || || || || || ||
Sbjct 2847025 CATCCAGAAGGAGTCCACTCTTCACTTGGT 2847054
>seq652
Length=2384379
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||| ||||| || || | ||||| ||||| || ||| ||||| || |
Sbjct 465057 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACCTTGGAAGTTGAGAGCTC 465116
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
|| | ||| | | || ||| |||||| ||||| |||||| | ||| |||||
Sbjct 465117 TGACACCATTGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 465176
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
||||||||||| | ||| || |||||| | || ||| || ||| ||| ||||| ||
Sbjct 465177 GCAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTATAA 465236
Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468
||| || || || || || || || || ||
Sbjct 465237 CATCCAGAAGGAGTCCACTCTTCACTTGGT 465266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402151234212608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |