Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq49 100 2e-16 seq652 91.5 1e-13 >seq49 Length=4798478 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || || | ||||| || || || || ||||| || | Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || | | | | || ||| ||||||| |||||||||||| | ||| ||||| Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATCA 2870032 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || |||||||||| ||| || ||||| |||||||| || ||| ||| ||||| || Sbjct 2870033 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATAA 2870092 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || ||||| || || || || || || Sbjct 2870093 CATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| || || | ||||| || || || || ||||| || | Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | | | | | || ||| |||||| ||||| |||||| | ||| ||||| Sbjct 2840917 TGACACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2840976 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || |||||||||| ||| || ||||| |||||||| || ||| ||| |||||||| Sbjct 2840977 GCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2841036 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || ||||| || || || || || || Sbjct 2841037 CATCCAGAAAGAGTCCACTCTTCACTTGGT 2841066 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| || || | ||||| || || || || ||||| || | Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | | | | | || ||| ||||||| ||||| |||||| | ||| ||||| Sbjct 2846905 TGACACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2846964 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || |||||||||| ||| || ||||| |||||||| || ||| ||| |||||||| Sbjct 2846965 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2847024 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || || || || || || || || || Sbjct 2847025 CATCCAGAAGGAGTCCACTCTTCACTTGGT 2847054 >seq652 Length=2384379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || || | ||||| ||||| || ||| ||||| || | Sbjct 465057 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACCTTGGAAGTTGAGAGCTC 465116 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | ||| | | || ||| |||||| ||||| |||||| | ||| ||||| Sbjct 465117 TGACACCATTGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 465176 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||||||||| | ||| || |||||| | || ||| || ||| ||| ||||| || Sbjct 465177 GCAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTATAA 465236 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 ||| || || || || || || || || || Sbjct 465237 CATCCAGAAGGAGTCCACTCTTCACTTGGT 465266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402151234212608