Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq161 419 3e-111 seq87 131 2e-24 seq74 113 6e-19 seq85 102 1e-15 >seq161 Length=5110746 Score = 419 bits (464), Expect = 3e-111 Identities = 438/566 (77%), Gaps = 18/566 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| || ||| | |||||| |||| || | ||||||| |||| |||| || | Sbjct 1383788 GAGCCCCTTCTGGCCCCGAACCCGGACCGTTTCTGCATGTTCCCTATCCAGTACCCGCAG 1383847 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1383848 ATCTGGGAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTTGACCT 1383906 Query 1455836 CGGCGCCGACA-CGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | | ||| | ||| |||||| || || | ||||||||||||||| ||| ||| | Sbjct 1383907 CTCCCAGGACCTCCGTC-ACTGGGACTCCCTCACCGACGACGAGCGCCACTTCGTCACCC 1383965 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 || |||||||||| || ||||||| ||| |||||||| ||||||||| |||| |||| Sbjct 1383966 ACATCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGC 1384024 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || ||||| |||||||| | | ||||| || || ||||| ||||||||||||||| Sbjct 1384025 TTCATGAAGGAGGTCCAGCTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 1384084 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| || | ||| ||||| |||| ||||||||||||||| | | | Sbjct 1384085 GAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACGTCAAGGACTCCGCC 1384144 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGT----GCCGTCGGTGAGGAAAAAGGC 1456130 |||||||||| |||||| ||||| ||||||| || ||||||| | ||||| Sbjct 1384145 GAGAAGGACCGCCTCTTCCGCGCGGTCGACACCGTCCCCGCCGTCGCT----CGCAAGGC 1384200 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||| | ||| || || | ||| | | ||| |||||||| ||| || Sbjct 1384201 GGACTGGGCCCTCCGCTGGGTCGAC----GGCGCCGAGTC-CTTCGCCGAGCGCCTCCTC 1384255 Query 1456191 GGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | ||| ||| |||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct 1384256 GCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGTTTCTGCGCCATCTTCTGGCTC 1384315 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||||||||| || || Sbjct 1384316 AAGAAGCGCGGCCTCATGCCGGGGCT 1384341 Score = 143 bits (158), Expect = 4e-28 Identities = 230/321 (72%), Gaps = 16/321 (5%) Strand=Plus/Plus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||| ||||| ||||| ||||||||| || |||| | |||||| | ||| | | Sbjct 1384382 CACTGCGACTTCGCCTGCCTGCTCTACTCGCTGCTGAAGAGGAAGCCG---AGCGAGGAG 1384438 Query 1456514 CCCAAGCAGATCATCGT---CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | || | ||||| ||||||||| || ||||||| ||||| ||| |||| || Sbjct 1384439 CGGGTGCGGGGGATCGTGCGCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCG 1384498 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 || ||| || || | || |||||| | ||| ||||| |||||||||| || || Sbjct 1384499 CTCCCGTGCGCCCTGGTGGGGATGAACCGGGACC--TCATGGGCCAGTACATCGAGTTC- 1384555 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC--AAC 1456687 ||||||||||| || |||| || |||| || ||| |||| ||| | || || ||| Sbjct 1384556 GTCGCCGACCGTCTCCTCGGCGCCCTCGACTACGG-GAAGATGTACAG--CGTCCCGAAC 1384612 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 || ||| ||||||||| | |||||||| |||| ||||||||||| |||||| || Sbjct 1384613 CCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGG 1384672 Query 1456748 GT-GGCGAGTACGCCAAGGCC 1456767 || || |||||| |||||| Sbjct 1384673 GTCGGGGAGTACCAGAAGGCC 1384693 >seq87 Length=12262769 Score = 131 bits (144), Expect = 2e-24 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||| |||||| || | | || |||| |||| |||| | Sbjct 10869453 ATCTTCAAGGTGCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCT 10869400 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| ||| | ||| || Sbjct 10869399 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCG 10869340 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| || ||| | | || ||||||||||| ||||| Sbjct 10869339 CGCCTCGCCCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACGGCCGTC 10869280 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | ||||| ||||||| ||||||||||||||||||||||| Sbjct 10869279 CGCCTCGTCCTACCGGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 10869228 >seq74 Length=10145792 Score = 113 bits (124), Expect = 6e-19 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| |||||| || | | ||| ||| |||| |||| || Sbjct 4504927 ATCTTCAAGGTGCTGAAGCAGGTTCACCCC-GA--CATCGGG--ATC-TCCAGCAAGGCC 4504874 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| ||| | |||||| | Sbjct 4504873 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCT 4504814 Query 725031 CGCCTGGCGCGCTCCAACAAGC-GCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 | || || | | ||||||| || | |||||| | || |||||||||||||| || Sbjct 4504813 AGGCTCGCCAGGTACAACAAGAAGCCA-ACGATCACTTCCCGGGAGATCCAGACCGCGGT 4504755 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | | | |||||| || |||| |||||||||||||||||| || Sbjct 4504754 CCGGCTGGTGCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGAAC 4504704 Score = 104 bits (114), Expect = 3e-16 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||||| |||||||| ||||| || | | ||| ||| |||| |||| ||||| Sbjct 4487558 CAAGGTGCTGAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCCATGGG 4487505 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||||||||| || |||||||||| |||| ||| | ||| || ||||| Sbjct 4487504 CATCATGAACAGCTTCATCAACGACATCTTCGAGAAACTCGCCCAGGAGTCCTCCCGCCT 4487445 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 || | | ||||||| |||||| | | || ||||||||||| ||||| || || Sbjct 4487444 CGCCAGGTACAACAAGAAGCCGACGATCACCTCCCGGGAGATCCAGACAGCCGTCCGGCT 4487385 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | ||||| || |||| |||||||||||| |||||||||| Sbjct 4487384 CGTCCTCCCGGGCGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCA 4487338 Score = 95.1 bits (104), Expect = 2e-13 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||||| |||||||| || || || | | ||| ||| |||| |||| ||||| Sbjct 4509733 CAAGGTGCTGAAGCAGGTCCATCCG-GA--CATCGGG--ATC-TCCAGCAAGGCCATGGG 4509680 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||||||||| || ||||||| || |||| ||| | |||||| | || Sbjct 4509679 CATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCCCAAGAGGCCTCCAGGCT 4509620 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 ||| | | ||||||| |||||| | | || |||||||||||||| || || || Sbjct 4509619 CGCGAGGTACAACAAGAAGCCGACGATCACCTCCCGGGAGATCCAGACCGCGGTCCGGCT 4509560 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | | |||||| || |||| |||||||||||||||||| |||| Sbjct 4509559 CGTGCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGAACCA 4509513 >seq85 Length=5226098 Score = 102 bits (112), Expect = 1e-15 Identities = 167/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| || |||||| |||||||| ||||| || | | || |||| || | |||| || Sbjct 2853313 ATCTTCAGGGTGCTGAAGCAGGTCCACCCG-GA--CATCGG--CATC-TCGAGCAAGGCC 2853366 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| | ||| ||| | || Sbjct 2853367 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTGGGCCAGGAGTC--GT 2853424 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || ||||||| ||||||| || ||| | | || ||||||||||| |||| Sbjct 2853425 CGCGGCTCGCGCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACGGCCG 2853484 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||| | | | |||||| || |||| ||||||||| || |||||||||| Sbjct 2853485 TCCGCCTCGTGCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCGGAGGGCACCA 2853538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174302667940912