Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq161 419 3e-111
seq87 131 2e-24
seq74 113 6e-19
seq85 102 1e-15
>seq161
Length=5110746
Score = 419 bits (464), Expect = 3e-111
Identities = 438/566 (77%), Gaps = 18/566 (3%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||||| || ||| | |||||| |||| || | ||||||| |||| |||| || |
Sbjct 1383788 GAGCCCCTTCTGGCCCCGAACCCGGACCGTTTCTGCATGTTCCCTATCCAGTACCCGCAG 1383847
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
|| ||||| |||||| || ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1383848 ATCTGGGAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTTGACCT 1383906
Query 1455836 CGGCGCCGACA-CGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894
| | ||| | ||| |||||| || || | ||||||||||||||| ||| ||| |
Sbjct 1383907 CTCCCAGGACCTCCGTC-ACTGGGACTCCCTCACCGACGACGAGCGCCACTTCGTCACCC 1383965
Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954
|| |||||||||| || ||||||| ||| |||||||| ||||||||| |||| ||||
Sbjct 1383966 ACATCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGC 1384024
Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014
|| ||||| |||||||| | | ||||| || || ||||| |||||||||||||||
Sbjct 1384025 TTCATGAAGGAGGTCCAGCTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 1384084
Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074
|| ||||||||||| || | ||| ||||| |||| ||||||||||||||| | | |
Sbjct 1384085 GAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACGTCAAGGACTCCGCC 1384144
Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGT----GCCGTCGGTGAGGAAAAAGGC 1456130
|||||||||| |||||| ||||| ||||||| || ||||||| | |||||
Sbjct 1384145 GAGAAGGACCGCCTCTTCCGCGCGGTCGACACCGTCCCCGCCGTCGCT----CGCAAGGC 1384200
Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190
|||||||| | ||| || || | ||| | | ||| |||||||| ||| ||
Sbjct 1384201 GGACTGGGCCCTCCGCTGGGTCGAC----GGCGCCGAGTC-CTTCGCCGAGCGCCTCCTC 1384255
Query 1456191 GGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249
| ||| ||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 1384256 GCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGTTTCTGCGCCATCTTCTGGCTC 1384315
Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||||||||||||||||| || ||
Sbjct 1384316 AAGAAGCGCGGCCTCATGCCGGGGCT 1384341
Score = 143 bits (158), Expect = 4e-28
Identities = 230/321 (72%), Gaps = 16/321 (5%)
Strand=Plus/Plus
Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513
||||| ||||| ||||| ||||||||| || |||| | |||||| | ||| | |
Sbjct 1384382 CACTGCGACTTCGCCTGCCTGCTCTACTCGCTGCTGAAGAGGAAGCCG---AGCGAGGAG 1384438
Query 1456514 CCCAAGCAGATCATCGT---CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570
| || | ||||| ||||||||| || ||||||| ||||| ||| |||| ||
Sbjct 1384439 CGGGTGCGGGGGATCGTGCGCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCG 1384498
Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629
|| ||| || || | || |||||| | ||| ||||| |||||||||| || ||
Sbjct 1384499 CTCCCGTGCGCCCTGGTGGGGATGAACCGGGACC--TCATGGGCCAGTACATCGAGTTC- 1384555
Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC--AAC 1456687
||||||||||| || |||| || |||| || ||| |||| ||| | || || |||
Sbjct 1384556 GTCGCCGACCGTCTCCTCGGCGCCCTCGACTACGG-GAAGATGTACAG--CGTCCCGAAC 1384612
Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747
|| ||| ||||||||| | |||||||| |||| ||||||||||| |||||| ||
Sbjct 1384613 CCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGG 1384672
Query 1456748 GT-GGCGAGTACGCCAAGGCC 1456767
|| || |||||| ||||||
Sbjct 1384673 GTCGGGGAGTACCAGAAGGCC 1384693
>seq87
Length=12262769
Score = 131 bits (144), Expect = 2e-24
Identities = 171/232 (74%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| |||||||||||||||||| |||||| || | | || |||| |||| |||| |
Sbjct 10869453 ATCTTCAAGGTGCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCT 10869400
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || |||||||||| |||| ||| | ||| ||
Sbjct 10869399 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCG 10869340
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
||||| || |||| ||||||| || ||| | | || ||||||||||| |||||
Sbjct 10869339 CGCCTCGCCCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACGGCCGTC 10869280
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| || | | ||||| ||||||| |||||||||||||||||||||||
Sbjct 10869279 CGCCTCGTCCTACCGGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 10869228
>seq74
Length=10145792
Score = 113 bits (124), Expect = 6e-19
Identities = 168/231 (73%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| ||||||||| |||||||| |||||| || | | ||| ||| |||| |||| ||
Sbjct 4504927 ATCTTCAAGGTGCTGAAGCAGGTTCACCCC-GA--CATCGGG--ATC-TCCAGCAAGGCC 4504874
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || |||||||||| |||| ||| | |||||| |
Sbjct 4504873 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCT 4504814
Query 725031 CGCCTGGCGCGCTCCAACAAGC-GCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089
| || || | | ||||||| || | |||||| | || |||||||||||||| ||
Sbjct 4504813 AGGCTCGCCAGGTACAACAAGAAGCCA-ACGATCACTTCCCGGGAGATCCAGACCGCGGT 4504755
Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|| ||| | | | |||||| || |||| |||||||||||||||||| ||
Sbjct 4504754 CCGGCTGGTGCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGAAC 4504704
Score = 104 bits (114), Expect = 3e-16
Identities = 162/227 (71%), Gaps = 6/227 (3%)
Strand=Plus/Minus
Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975
||||||||| |||||||| ||||| || | | ||| ||| |||| |||| |||||
Sbjct 4487558 CAAGGTGCTGAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCCATGGG 4487505
Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035
||||||||| || |||||||||| |||| ||| | ||| || |||||
Sbjct 4487504 CATCATGAACAGCTTCATCAACGACATCTTCGAGAAACTCGCCCAGGAGTCCTCCCGCCT 4487445
Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095
|| | | ||||||| |||||| | | || ||||||||||| ||||| || ||
Sbjct 4487444 CGCCAGGTACAACAAGAAGCCGACGATCACCTCCCGGGAGATCCAGACAGCCGTCCGGCT 4487385
Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | | ||||| || |||| |||||||||||| ||||||||||
Sbjct 4487384 CGTCCTCCCGGGCGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCA 4487338
Score = 95.1 bits (104), Expect = 2e-13
Identities = 160/227 (70%), Gaps = 6/227 (3%)
Strand=Plus/Minus
Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975
||||||||| |||||||| || || || | | ||| ||| |||| |||| |||||
Sbjct 4509733 CAAGGTGCTGAAGCAGGTCCATCCG-GA--CATCGGG--ATC-TCCAGCAAGGCCATGGG 4509680
Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035
||||||||| || ||||||| || |||| ||| | |||||| | ||
Sbjct 4509679 CATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCCCAAGAGGCCTCCAGGCT 4509620
Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095
||| | | ||||||| |||||| | | || |||||||||||||| || || ||
Sbjct 4509619 CGCGAGGTACAACAAGAAGCCGACGATCACCTCCCGGGAGATCCAGACCGCGGTCCGGCT 4509560
Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| | | |||||| || |||| |||||||||||||||||| ||||
Sbjct 4509559 CGTGCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGAACCA 4509513
>seq85
Length=5226098
Score = 102 bits (112), Expect = 1e-15
Identities = 167/234 (71%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| || |||||| |||||||| ||||| || | | || |||| || | |||| ||
Sbjct 2853313 ATCTTCAGGGTGCTGAAGCAGGTCCACCCG-GA--CATCGG--CATC-TCGAGCAAGGCC 2853366
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || |||||||||| |||| | ||| ||| | ||
Sbjct 2853367 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTGGGCCAGGAGTC--GT 2853424
Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088
||| || ||||||| ||||||| || ||| | | || ||||||||||| ||||
Sbjct 2853425 CGCGGCTCGCGCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACGGCCG 2853484
Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| ||||| | | | |||||| || |||| ||||||||| || ||||||||||
Sbjct 2853485 TCCGCCTCGTGCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCGGAGGGCACCA 2853538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7174302667940912
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