Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 7e-13 seq161 84.2 3e-11 >seq12 Length=4956709 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | || || || || |||||||||||| | ||| | || || Sbjct 4012319 GTTCCTGCATTGAACAGGGTGGGGGAAGCATGAGTGAACCATCGCTGAGACATCATATGA 4012378 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| || || || || || || || |||||||| | || || | ||||||| Sbjct 4012379 TATGTTTTGATGGCAGAGTCGATGTCATCCTTGTGAATTCCAACAGCAACCCTCATCAAC 4012438 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||||| ||| || || | | |||| ||||| || | || || Sbjct 4012439 ATGTGCTGAGGTCTTTCCACAACCTTCCCTTGGACCTTCAGAAGGTAAGACCTCTCGAGT 4012498 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| ||||| |||| ||| ||| |||| || || || || Sbjct 4012499 GTTTTAAAACCAAAGTAGTCGTAATCAAAATCTCGGTCATAGATTAT 4012545 >seq161 Length=5110746 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 1384399 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAG 1384340 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || | || || |||| Sbjct 1384339 CCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAACTGCCGGAGAAGA 1384281 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 1384280 AGATGCCCTCGAC 1384268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686596462568640