Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq12 89.7 7e-13
seq161 84.2 3e-11
>seq12
Length=4956709
Score = 89.7 bits (98), Expect = 7e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||| ||||| || | || || || || |||||||||||| | ||| | || ||
Sbjct 4012319 GTTCCTGCATTGAACAGGGTGGGGGAAGCATGAGTGAACCATCGCTGAGACATCATATGA 4012378
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
||||||| || || || || || || || |||||||| | || || | |||||||
Sbjct 4012379 TATGTTTTGATGGCAGAGTCGATGTCATCCTTGTGAATTCCAACAGCAACCCTCATCAAC 4012438
Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170
|| |||||||||| ||| || || | | |||| ||||| || | || ||
Sbjct 4012439 ATGTGCTGAGGTCTTTCCACAACCTTCCCTTGGACCTTCAGAAGGTAAGACCTCTCGAGT 4012498
Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
|||||||| ||||| |||| ||| ||| |||| || || || ||
Sbjct 4012499 GTTTTAAAACCAAAGTAGTCGTAATCAAAATCTCGGTCATAGATTAT 4012545
>seq161
Length=5110746
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | || | ||||| || || |||||
Sbjct 1384399 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAG 1384340
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734
|| ||||| || || ||||| |||||||| || ||||| ||| || | || || ||||
Sbjct 1384339 CCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAACTGCCGGAGAAGA 1384281
Query 39735 AGATGCCTTCTAC 39747
||||||| || ||
Sbjct 1384280 AGATGCCCTCGAC 1384268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686596462568640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |