Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq18 82.4 6e-11 >seq18 Length=12238210 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 ||||| || ||| ||||| ||| ||||||||||| ||||||| | || | ||||||| Sbjct 5539918 CAGTTCTATGTTGCAAATGGGGAATTGTCATGTCAAATGTATCAGCGCTCTGCTGACATG 5539859 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 ||| | || || || || || || || ||||||||| || || | |||||||| || Sbjct 5539858 GGATTGGGAGTGCCATTCAATATTGCTTCTTATGCTCTCCTTACATGCATGATTGCTCAT 5539799 Query 41199 GTT 41201 ||| Sbjct 5539798 GTT 5539796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397279794837880