Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq18 82.4 6e-11
>seq18
Length=12238210
Score = 82.4 bits (90), Expect = 6e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138
||||| || ||| ||||| ||| ||||||||||| ||||||| | || | |||||||
Sbjct 5539918 CAGTTCTATGTTGCAAATGGGGAATTGTCATGTCAAATGTATCAGCGCTCTGCTGACATG 5539859
Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198
||| | || || || || || || || ||||||||| || || | |||||||| ||
Sbjct 5539858 GGATTGGGAGTGCCATTCAATATTGCTTCTTATGCTCTCCTTACATGCATGATTGCTCAT 5539799
Query 41199 GTT 41201
|||
Sbjct 5539798 GTT 5539796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397279794837880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |