Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq569 107 2e-18
seq116 102 7e-17
seq203 89.7 4e-13
seq49 89.7 4e-13
seq22 87.8 2e-12
>seq569
Length=4400913
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| | | |||| |||| |||||||| || |||
Sbjct 2054731 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 2054790
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||| ||||| || ||||| || | ||||||||||| ||||||| ||
Sbjct 2054791 GCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 2054850
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | || || || || || || || | || ||||| || |||
Sbjct 2054851 ACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGTT 2054910
Query 27231 TTCACAAAGATTTGCAT 27247
||||| ||||| |||||
Sbjct 2054911 TTCACGAAGATCTGCAT 2054927
>seq116
Length=10441785
Score = 102 bits (112), Expect = 7e-17
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || |||||||||||| | | |||| |||| |||||||| || |||
Sbjct 4726941 GTAGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCG 4726882
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||| ||||| ||||||||||| | ||||| || || ||||| |||
Sbjct 4726881 GCGAAGATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGAATCTTCGCCTTC 4726822
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | | || || || || || || | || || ||||| ||
Sbjct 4726821 ACATTGTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCTGTCAGGGTC 4726762
Query 27231 TTCACAAAGATTTGCATAGCT 27251
||||| ||||| |||||| ||
Sbjct 4726761 TTCACGAAGATCTGCATACCT 4726741
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|||||||| | || || || | || | ||| || || || || || ||||| |||
Sbjct 4711844 CCTCCGCGGAGCCTCAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCG 4711903
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | |||| |||||||| || |||||| | || |||||||| |||||||||||
Sbjct 4711904 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 4711963
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| || || ||||||| || | | | || | ||||| | | || ||
Sbjct 4711964 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCCGAGCTCTCGACC 4712023
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | |||||| ||||| || || || ||||| |||||
Sbjct 4712024 TCGAGCGTGATGGTTTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4712070
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|||||||| | || || || | || | ||| || ||||| || || ||||| |||
Sbjct 4726743 CCTCCGCGGAGCCTCAGGACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCGGCG 4726684
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | |||| |||||||| || |||||| | || |||||||| |||||||||||
Sbjct 4726683 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 4726624
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| ||||| ||| ||| || | | | || | ||||| | | || ||
Sbjct 4726623 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGACC 4726564
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | ||||| || || || || || ||||| |||||
Sbjct 4726563 TCGAGCGTGATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 4726517
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || |||||||| ||| | | |||| |||| || ||||| || |||
Sbjct 4711646 GTAGACTCCTTCTGGATATTGTAATCGGCGAGGGTGCGACCGTCCTCCAGCTGCTTCCCG 4711705
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||| ||||| ||||||||||| | ||||| || || ||||| |||
Sbjct 4711706 GCGAAGATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGTATCTTCGCCTTC 4711765
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | | || || || || || || | || || ||||| ||
Sbjct 4711766 ACATTGTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTC 4711825
Query 27231 TTCACAAAGATTTGCATAGCT 27251
||||| ||||| |||||| ||
Sbjct 4711826 TTCACGAAGATCTGCATACCT 4711846
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
||||||| || | || || || | || | ||| || || || || |||||||| |||
Sbjct 4726517 TGCCTCCACGGAGCCTCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGG 4726458
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| | | | |||| |||||||| || || ||| | || |||||||| ||||||||||
Sbjct 4726457 CGAGGGTCCTACCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCCGGCG 4726398
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| || || ||| ||| || | | | || | ||||| | | || |
Sbjct 4726397 GGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGA 4726338
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || || || || | || || ||||| || || || ||||| |||||
Sbjct 4726337 CCTCGAGCGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAGATCTGCAT 4726289
>seq203
Length=8626763
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || ||||| || | ||||| || | || || ||||| || || |||||||| | |
Sbjct 5730384 CCACCCCGCAAACGGAGCACCAAGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTC-CGC 5730326
Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | | | | ||||| ||||| || || || ||||||| | ||| || ||||| ||
Sbjct 5730325 AAGCGTCCTGCCATCTTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCCGGTGG 5730266
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| |||||| || || |||||| || | | || | ||||| | | |||||
Sbjct 5730265 AATACCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAAC 5730206
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|||||| || || | || || || || || |||||||||||||||||
Sbjct 5730205 TTCTAGGGTAATTGTCTTCCCAGTGAGGGTCTTCACAAAGATTTGCAT 5730158
>seq49
Length=4798478
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| |||| || || || ||||| || ||||| || || | ||||| | || |||
Sbjct 2840382 ACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTCG 2840323
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || || | ||||| | ||| || || || || | ||||| || ||
Sbjct 2840322 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGA 2840263
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | || || ||||| | | |||||| || || || || | |||
Sbjct 2840262 ATCTTGGCCTTGACATTATCAACCGTGTCCGAGCTTTCAACCTCGAGGGTAATGGTCTTG 2840203
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || ||||||||||| |||||
Sbjct 2840202 CCGGTGAGGGTCTTCACAAAGATCTGCAT 2840174
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| |||| || || ||||| || || || ||||| || | | | ||||||||
Sbjct 2841522 ACCAAGTGTAGAGTCGACTCTTTCTGGATGTTATAGTCAGCCAAAGTCCTCCCGTCTTCG 2841463
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || ||||| | || || | ||| || || || || | ||||| ||||| |
Sbjct 2841462 AGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGG 2841403
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| |||| | | || | ||||||| || ||||| | ||| |||| ||
Sbjct 2841402 ATCTTCGCCTTCACGTTGTCAATGGTGTCTGAACTCTCCACTTCCAAAGTGATAGTCTTT 2841343
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || || |||||||| |||||
Sbjct 2841342 CCGGTCAGGGTCTTGACAAAGATCTGCAT 2841314
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| | || || || ||||| || ||||| || || | ||||| | || |||
Sbjct 2846188 ACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTCG 2846129
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || || | ||||| | ||| || || || || | |||||||| ||
Sbjct 2846128 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCTTTGTCTTGA 2846069
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | || | ||||| | | |||||| || || || || | |||
Sbjct 2846068 ATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCAACCTCGAGGGTAATGGTCTTG 2846009
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || ||||||||||| |||||
Sbjct 2846008 CCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| || | || | ||| | ||| || || |||||||||||||| ||| |
Sbjct 2841312 CCACCACGCAGACGGAGGACAAGATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCC 2841253
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || | || ||||||||||| || || |||| | ||||| || || || ||
Sbjct 2841252 AGTGTCCGGCCATCCTCGAGCTGTTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2841193
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || || || ||||| ||| | | || | ||||| | | || |||
Sbjct 2841192 ATGCCTTCCTTGTCCTGTATCTTCGCTTTGACATTATCAATCGTGTCCGAGCTCTCGACT 2841133
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | ||| |||| ||||| |||||||| |||||||| || |||||
Sbjct 2841132 TCCAAAGTGATAGTCTTGCCAGTCAGAGTCTTCACAAAAATCTGCAT 2841086
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| |||| || || || || || || ||||| || || | ||||| | || |||
Sbjct 2869666 ACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTCG 2869607
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || || | ||||| | ||| || || || || | ||||| || ||
Sbjct 2869606 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGA 2869547
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | || || ||||| | | |||||| || || || || | |||
Sbjct 2869546 ATCTTGGCCTTGACATTATCAACCGTGTCCGAGCTTTCAACCTCAAGGGTAATGGTCTTG 2869487
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || ||||||||||| |||||
Sbjct 2869486 CCGGTGAGGGTCTTCACAAAGATCTGCAT 2869458
>seq22
Length=3960921
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || || ||||||||| | | | || |||| |||||||| || ||
Sbjct 262913 GTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 262972
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||
Sbjct 262973 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 263032
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | | || || || || || || | ||||| |||| ||
Sbjct 263033 ACGTTGTCAATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 263092
Query 27231 TTCACAAAGATTTGCATAGCT 27251
|| || ||||| |||||| ||
Sbjct 263093 TTGACGAAGATCTGCATACCT 263113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424746012770112
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