Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq569 107 2e-18 seq116 102 7e-17 seq203 89.7 4e-13 seq49 89.7 4e-13 seq22 87.8 2e-12 >seq569 Length=4400913 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 2054731 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 2054790 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | ||||||||||| ||||||| || Sbjct 2054791 GCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 2054850 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | || ||||| || ||| Sbjct 2054851 ACGTTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGTT 2054910 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 2054911 TTCACGAAGATCTGCAT 2054927 >seq116 Length=10441785 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || |||||||||||| | | |||| |||| |||||||| || ||| Sbjct 4726941 GTAGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCG 4726882 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| ||||||||||| | ||||| || || ||||| ||| Sbjct 4726881 GCGAAGATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGAATCTTCGCCTTC 4726822 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | || || ||||| || Sbjct 4726821 ACATTGTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCTGTCAGGGTC 4726762 Query 27231 TTCACAAAGATTTGCATAGCT 27251 ||||| ||||| |||||| || Sbjct 4726761 TTCACGAAGATCTGCATACCT 4726741 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || || || | || | ||| || || || || || ||||| ||| Sbjct 4711844 CCTCCGCGGAGCCTCAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCG 4711903 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||| |||||||| || |||||| | || |||||||| ||||||||||| Sbjct 4711904 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 4711963 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | | || || Sbjct 4711964 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCCGAGCTCTCGACC 4712023 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||| ||||| || || || ||||| ||||| Sbjct 4712024 TCGAGCGTGATGGTTTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4712070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || || || | || | ||| || ||||| || || ||||| ||| Sbjct 4726743 CCTCCGCGGAGCCTCAGGACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGTAATCGGCG 4726684 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||| |||||||| || |||||| | || |||||||| ||||||||||| Sbjct 4726683 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 4726624 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||| ||| || | | | || | ||||| | | || || Sbjct 4726623 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGACC 4726564 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || || || || ||||| ||||| Sbjct 4726563 TCGAGCGTGATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 4726517 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || |||||||| ||| | | |||| |||| || ||||| || ||| Sbjct 4711646 GTAGACTCCTTCTGGATATTGTAATCGGCGAGGGTGCGACCGTCCTCCAGCTGCTTCCCG 4711705 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| ||||||||||| | ||||| || || ||||| ||| Sbjct 4711706 GCGAAGATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGTATCTTCGCCTTC 4711765 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | || || ||||| || Sbjct 4711766 ACATTGTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTC 4711825 Query 27231 TTCACAAAGATTTGCATAGCT 27251 ||||| ||||| |||||| || Sbjct 4711826 TTCACGAAGATCTGCATACCT 4711846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || || || | || | ||| || || || || |||||||| ||| Sbjct 4726517 TGCCTCCACGGAGCCTCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGG 4726458 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | |||| |||||||| || || ||| | || |||||||| |||||||||| Sbjct 4726457 CGAGGGTCCTACCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCCGGCG 4726398 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| ||| || | | | || | ||||| | | || | Sbjct 4726397 GGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGA 4726338 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || ||||| || || || ||||| ||||| Sbjct 4726337 CCTCGAGCGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAGATCTGCAT 4726289 >seq203 Length=8626763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || | ||||| || | || || ||||| || || |||||||| | | Sbjct 5730384 CCACCCCGCAAACGGAGCACCAAGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTC-CGC 5730326 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | | ||||| ||||| || || || ||||||| | ||| || ||||| || Sbjct 5730325 AAGCGTCCTGCCATCTTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCCGGTGG 5730266 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| || | | || | ||||| | | ||||| Sbjct 5730265 AATACCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAAC 5730206 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||| || || | || || || || || ||||||||||||||||| Sbjct 5730205 TTCTAGGGTAATTGTCTTCCCAGTGAGGGTCTTCACAAAGATTTGCAT 5730158 >seq49 Length=4798478 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| |||| || || || ||||| || ||||| || || | ||||| | || ||| Sbjct 2840382 ACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTCG 2840323 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| | ||| || || || || | ||||| || || Sbjct 2840322 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGA 2840263 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || || ||||| | | |||||| || || || || | ||| Sbjct 2840262 ATCTTGGCCTTGACATTATCAACCGTGTCCGAGCTTTCAACCTCGAGGGTAATGGTCTTG 2840203 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 2840202 CCGGTGAGGGTCTTCACAAAGATCTGCAT 2840174 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| |||| || || ||||| || || || ||||| || | | | |||||||| Sbjct 2841522 ACCAAGTGTAGAGTCGACTCTTTCTGGATGTTATAGTCAGCCAAAGTCCTCCCGTCTTCG 2841463 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | || || | ||| || || || || | ||||| ||||| | Sbjct 2841462 AGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGG 2841403 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||||| || ||||| | ||| |||| || Sbjct 2841402 ATCTTCGCCTTCACGTTGTCAATGGTGTCTGAACTCTCCACTTCCAAAGTGATAGTCTTT 2841343 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || || |||||||| ||||| Sbjct 2841342 CCGGTCAGGGTCTTGACAAAGATCTGCAT 2841314 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || ||||| || ||||| || || | ||||| | || ||| Sbjct 2846188 ACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTCG 2846129 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| | ||| || || || || | |||||||| || Sbjct 2846128 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCTTTGTCTTGA 2846069 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | |||||| || || || || | ||| Sbjct 2846068 ATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCAACCTCGAGGGTAATGGTCTTG 2846009 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 2846008 CCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | || | ||| | ||| || || |||||||||||||| ||| | Sbjct 2841312 CCACCACGCAGACGGAGGACAAGATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCC 2841253 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || ||||||||||| || || |||| | ||||| || || || || Sbjct 2841252 AGTGTCCGGCCATCCTCGAGCTGTTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2841193 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||| ||| | | || | ||||| | | || ||| Sbjct 2841192 ATGCCTTCCTTGTCCTGTATCTTCGCTTTGACATTATCAATCGTGTCCGAGCTCTCGACT 2841133 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| |||| ||||| |||||||| |||||||| || ||||| Sbjct 2841132 TCCAAAGTGATAGTCTTGCCAGTCAGAGTCTTCACAAAAATCTGCAT 2841086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| |||| || || || || || || ||||| || || | ||||| | || ||| Sbjct 2869666 ACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGCCCATCCTCG 2869607 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| | ||| || || || || | ||||| || || Sbjct 2869606 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGA 2869547 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || || ||||| | | |||||| || || || || | ||| Sbjct 2869546 ATCTTGGCCTTGACATTATCAACCGTGTCCGAGCTTTCAACCTCAAGGGTAATGGTCTTG 2869487 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 2869486 CCGGTGAGGGTCTTCACAAAGATCTGCAT 2869458 >seq22 Length=3960921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| | | | || |||| |||||||| || || Sbjct 262913 GTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 262972 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 262973 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 263032 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| |||| || Sbjct 263033 ACGTTGTCAATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 263092 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || ||||| |||||| || Sbjct 263093 TTGACGAAGATCTGCATACCT 263113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424746012770112