Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq49 118 1e-21 seq161 113 6e-20 seq24 102 1e-16 >seq49 Length=4798478 Score = 118 bits (130), Expect = 1e-21 Identities = 194/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || ||||| |||||||||||||| || Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | ||| | ||||||||||||||||||||||| || ||||| || Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973 Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || || |||| | || | ||||| | || | ||| ||| ||||| || || | Sbjct 1563974 AGG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCA 1564032 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| ||||||||| | | || | ||| || |||||| ||| | ||||| | Sbjct 1564033 CAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAG 1564092 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | || | || | |||||||| || || || || Sbjct 1564093 CCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129 >seq161 Length=5110746 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 1384384 GTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCC 1384325 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| |||||||||||||| ||||| || || Sbjct 1384324 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGACGCA 1384265 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || || | ||||| ||||||||||| Sbjct 1384264 GGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235 >seq24 Length=10012559 Score = 102 bits (112), Expect = 1e-16 Identities = 253/372 (68%), Gaps = 24/372 (6%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| ||||| || ||||| | |||||| ||||||||||||||| || Sbjct 7389825 AAAACCATCCATCTCAGTGAGCAACTGATTCAATGTTTGCTCTCTCTCATCATTTCCT-- 7389768 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | |||| | | ||| | || || ||||||||||||||||||||||| | Sbjct 7389767 CCTCCAATGCCAGTCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACCAAG 7389708 Query 11657 CATGGTTGATT----TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || ||| ||||| | || ||| || || || ||||| || || || Sbjct 7389707 CAAGGCGAATTCGCCTTCGC---CTTGTTGAAA-AGGTCACGCACCCTCGAAGCGCCTAC 7389652 Query 11713 ACCAACAAACATCTCCACAAAGTTTG---CGG-CAGAGCACTGGATGAATGGGACATTTG 11768 |||||||||||||| | || | || ||| ||| | | | ||| ||||| | Sbjct 7389651 GCCAACAAACATCTCAATGAACTCTGACCCGGACAGCGAA----AAGAAAGGGACCCCAG 7389596 Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAA 11828 ||| || || || || ||| | | |||||| || || || || ||| | |||| Sbjct 7389595 CTTCTCCTGCAATCGCCTTGGCCAACAAGGTCTTCCCTGTCCCCGGTGGCCCCACTAGAA 7389536 Query 11829 GGGCGCCTCGGGGGATCTTGGC-ACCACTTCC-AAAATATCTCTCGGGTTGCTTGAGAAA 11886 | | ||| ||||||| | || |||| || ||| |||| ||| | ||| || || Sbjct 7389535 GAACTCCTTTGGGGATCCTCGCTCCCACGGCCGCAAACTTCTC-CGGCGTCCTTAAG-AA 7389478 Query 11887 ATCCACAATCTC 11898 ||||||||||| Sbjct 7389477 CTCCACAATCTC 7389466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627746433849600