Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq49 118 1e-21
seq161 113 6e-20
seq24 102 1e-16
>seq49
Length=4798478
Score = 118 bits (130), Expect = 1e-21
Identities = 194/277 (70%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || | || ||||| || ||||| |||||||||||||| ||
Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913
Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658
| |||||| | | ||| | ||||||||||||||||||||||| || ||||| ||
Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973
Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717
|| || |||| | || | ||||| | || | ||| ||| ||||| || || |
Sbjct 1563974 AGG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCA 1564032
Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777
|||||| ||||||||| | | || | ||| || |||||| ||| | ||||| |
Sbjct 1564033 CAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAG 1564092
Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
| | || | || | |||||||| || || || ||
Sbjct 1564093 CCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129
>seq161
Length=5110746
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||| ||||| || ||||| || || || || |||||| || || |||||||| ||
Sbjct 1384384 GTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCC 1384325
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | ||| | || |||||||| |||||||||||||| ||||| || ||
Sbjct 1384324 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGACGCA 1384265
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819
|| || || | ||||| |||||||||||
Sbjct 1384264 GGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235
>seq24
Length=10012559
Score = 102 bits (112), Expect = 1e-16
Identities = 253/372 (68%), Gaps = 24/372 (6%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| ||||| || ||||| | |||||| ||||||||||||||| ||
Sbjct 7389825 AAAACCATCCATCTCAGTGAGCAACTGATTCAATGTTTGCTCTCTCTCATCATTTCCT-- 7389768
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | | | |||| | | ||| | || || ||||||||||||||||||||||| |
Sbjct 7389767 CCTCCAATGCCAGTCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACCAAG 7389708
Query 11657 CATGGTTGATT----TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712
|| || ||| ||||| | || ||| || || || ||||| || || ||
Sbjct 7389707 CAAGGCGAATTCGCCTTCGC---CTTGTTGAAA-AGGTCACGCACCCTCGAAGCGCCTAC 7389652
Query 11713 ACCAACAAACATCTCCACAAAGTTTG---CGG-CAGAGCACTGGATGAATGGGACATTTG 11768
|||||||||||||| | || | || ||| ||| | | | ||| ||||| |
Sbjct 7389651 GCCAACAAACATCTCAATGAACTCTGACCCGGACAGCGAA----AAGAAAGGGACCCCAG 7389596
Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAA 11828
||| || || || || ||| | | |||||| || || || || ||| | ||||
Sbjct 7389595 CTTCTCCTGCAATCGCCTTGGCCAACAAGGTCTTCCCTGTCCCCGGTGGCCCCACTAGAA 7389536
Query 11829 GGGCGCCTCGGGGGATCTTGGC-ACCACTTCC-AAAATATCTCTCGGGTTGCTTGAGAAA 11886
| | ||| ||||||| | || |||| || ||| |||| ||| | ||| || ||
Sbjct 7389535 GAACTCCTTTGGGGATCCTCGCTCCCACGGCCGCAAACTTCTC-CGGCGTCCTTAAG-AA 7389478
Query 11887 ATCCACAATCTC 11898
|||||||||||
Sbjct 7389477 CTCCACAATCTC 7389466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627746433849600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |