Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq161 170 2e-37
seq49 105 8e-18
>seq161
Length=5110746
Score = 170 bits (188), Expect = 2e-37
Identities = 313/453 (69%), Gaps = 8/453 (2%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| ||||| |||||||||||||||||||| |||||||| | || ||| ||||||
Sbjct 1384683 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 1384624
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
| || || |||||| | | | || | | | | || | | |||||||||
Sbjct 1384623 CAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCC-GAGGAGACG 1384565
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||| ||||||| ||| || |||||| || | ||| ||
Sbjct 1384564 GTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGCA 1384505
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
||||||||||| ||| |||| || |||| |||||||| || || |||||||| | |
Sbjct 1384504 CGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCCG 1384445
Query 129967 AATGGTCTCCGTGCCAGGT---CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
| |||| || || || || ||| | | || || || ||| || ||
Sbjct 1384444 CACCCGCTCCTCGCTCGGCTTCCTCTTCAGCAGCGAGTAGAGCAGG--CA-GGCGAAGTC 1384388
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
|||||| |||||||| ||||||||||| || ||||||||| || || ||||||||
Sbjct 1384387 GCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAG 1384328
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||| | |||||| || || || || ||| ||||||||||| ||||| ||
Sbjct 1384327 GCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGAC 1384268
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176
|| ||||| || | ||| ||||| || |||||
Sbjct 1384267 GCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235
>seq49
Length=4798478
Score = 105 bits (116), Expect = 8e-18
Identities = 191/277 (69%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
||| ||||||||||||||||| || |||||||| ||||| || | ||||||||| |
Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913
Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271
| ||| || | | ||| | || || || ||||| ||||| || || || || ||
Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973
Query 14272 TGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330
|| || |||| || || ||||| | || | ||||| |||||||| ||||
Sbjct 1563974 AGG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCA 1564032
Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390
|||||| ||||||||| | || || | ||| || ||| || || || ||||| |
Sbjct 1564033 CAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAG 1564092
Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427
| | || | || | ||||||||||| ||||| ||
Sbjct 1564093 CCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618153997514560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |