Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq161 170 2e-37 seq49 105 8e-18 >seq161 Length=5110746 Score = 170 bits (188), Expect = 2e-37 Identities = 313/453 (69%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| |||||||||||||||||||| |||||||| | || ||| |||||| Sbjct 1384683 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 1384624 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || |||||| | | | || | | | | || | | ||||||||| Sbjct 1384623 CAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCC-GAGGAGACG 1384565 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| || |||||| || | ||| || Sbjct 1384564 GTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGCA 1384505 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||||||| ||| |||| || |||| |||||||| || || |||||||| | | Sbjct 1384504 CGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCCG 1384445 Query 129967 AATGGTCTCCGTGCCAGGT---CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 | |||| || || || || ||| | | || || || ||| || || Sbjct 1384444 CACCCGCTCCTCGCTCGGCTTCCTCTTCAGCAGCGAGTAGAGCAGG--CA-GGCGAAGTC 1384388 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||| |||||||| ||||||||||| || ||||||||| || || |||||||| Sbjct 1384387 GCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAG 1384328 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || || || || ||| ||||||||||| ||||| || Sbjct 1384327 GCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGAC 1384268 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || ||||| || | ||| ||||| || ||||| Sbjct 1384267 GCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235 >seq49 Length=4798478 Score = 105 bits (116), Expect = 8e-18 Identities = 191/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | ||| | || || || ||||| ||||| || || || || || Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973 Query 14272 TGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || || |||| || || ||||| | || | ||||| |||||||| |||| Sbjct 1563974 AGG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCA 1564032 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| ||||||||| | || || | ||| || ||| || || || ||||| | Sbjct 1564033 CAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAG 1564092 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | | || | || | ||||||||||| ||||| || Sbjct 1564093 CCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618153997514560