Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq161 136 5e-27
seq109 113 5e-20
seq49 111 2e-19
seq24 89.7 6e-13
>seq161
Length=5110746
Score = 136 bits (150), Expect = 5e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
||||| || ||||| ||| |||| || || || || ||||| ||||||||||| ||
Sbjct 1384235 TCCTTCGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGT 1384294
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | |||||||||||||| || |||||||| || ||| |||||| |||
Sbjct 1384295 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1384354
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
||||| ||||| || |||||||| ||||||
Sbjct 1384355 GAGCTCATCTCCCGGGACGAGGGCCTCCAC 1384384
>seq109
Length=8785251
Score = 113 bits (124), Expect = 5e-20
Identities = 298/446 (67%), Gaps = 12/446 (3%)
Strand=Plus/Minus
Query 9572 CGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTG 9629
|| || || || || | |||| ||||| || ||| || ||||||||||||| ||||
Sbjct 6755119 CGGTTAGTTGCCGCAACAACAATGATACCCGTATTTCCTT--CAAAACCATCCATTTCTG 6755062
Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9687
|||| || || |||| || || |||| ||||||||| || | | | | |||| |
Sbjct 6755061 TCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCC 6755004
Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GC 9746
| ||| ||||||||||||||| ||||||| ||||| ||||| || ||| ||
Sbjct 6755003 TCTCTGCCGTCCCACGGCATCAATTTCATCAACAAAGACAATGCAGGGAGCATTCTCTTT 6754944
Query 9747 GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAA 9806
| | ||| ||| ||||| || || | || || |||||||| |||||||| || |
Sbjct 6754943 GGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACCAACGAACATCTCAACGA 6754885
Query 9807 AGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCG 9865
| | | | ||| || | || || || ||| | |||||| ||||| || |||
Sbjct 6754884 ACTCAGAACCTGAA-ATGGAGAAAAAAGGAACACCTGCTTCACCAGCAATTGCCTTGGCA 6754826
Query 9866 AGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG 9925
|| || || || || || ||||| ||| | || ||| |||| || || ||
Sbjct 6754825 AGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCC 6754766
Query 9926 CCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCT 9985
||| | || | |||||||||| ||| ||||| ||||| | ||| || || |
Sbjct 6754765 CCAACTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCACCACTTCCATGAAGTCCTGC 6754706
Query 9986 TTGGCGGCGTCAATCCCCTCAACATC 10011
||||| | |||| || |||||||
Sbjct 6754705 TTGGCCTCATCAACACCAGCAACATC 6754680
>seq49
Length=4798478
Score = 111 bits (122), Expect = 2e-19
Identities = 197/280 (70%), Gaps = 8/280 (3%)
Strand=Plus/Plus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||||||||||||||| ||||| || || || |||||||| || | ||||||||| ||
Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913
Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732
| |||||| | | ||| | ||||| ||||||||||||||||| || || |||||
Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973
Query 9733 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 9788
|| || |||| | || || ||||| | |||| || || |||| || || || |
Sbjct 1563974 AGG-TGCTTTT-GACTTCGCCTTCTCAAACAAGTCCC-TA-ACTCTTGAAGCACCGACGC 1564029
Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848
| ||||||| ||||||||| | | || | ||| || ||| || ||| || ||||
Sbjct 1564030 CCACAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCAC 1564089
Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
| || | || | || | ||| ||||| || || || ||
Sbjct 1564090 CAGCCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129
>seq24
Length=10012559
Score = 89.7 bits (98), Expect = 6e-13
Identities = 251/371 (68%), Gaps = 16/371 (4%)
Strand=Plus/Minus
Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585
|||||| | ||||| || || | || ||| ||||| || ||||||||| | ||
Sbjct 7389912 ATCAAACCTTCCTGGCCGGAGCAAGGCAGAATCGAGGATTTCGGGACGATTCGTCACCGC 7389853
Query 9586 GATGACAA-CAATAC-CTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
|||||||| || | | ||||| | | ||||||||||||||| || | | || ||
Sbjct 7389852 GATGACAATCACTCCACTGTTCCC--ACTAAAACCATCCATCTCAGTGAGCAACTGATTC 7389795
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701
| ||||| || | |||||||| || | | | | |||| | | ||| | || |
Sbjct 7389794 AATGTTTGCTCTCTCTCATCATTTCCT--CCTCCAATGCCAGTCCCTCTCTGCCTCCCAA 7389737
Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAA 9759
| ||||||||||||||||||||||| | ||| || || ||||| || || | ||
Sbjct 7389736 CAGCATCAATCTCATCAATGAAGACCAAGCAAGG-CGA-ATTCGCCTTCGCCTTGTTGAA 7389679
Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819
|| || || || | | ||||| || |||||||||||||| | || | || |||
Sbjct 7389678 AAGGTCACGCACCCTCGAAGCGCCTACGCCAACAAACATCTCAATGAACTCTGACCCGG- 7389620
Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT-GGCTCGGGCGAGAAGAGTCTTA 9877
||| | | ||| ||||| || ||| || ||||| | || || | | ||| |||||
Sbjct 7389619 ACAGCGAAAAGAAAGGGACCCCAGCTTCTCCTGCAATCGCCTTGGCCAACAAG-GTCTTC 7389561
Query 9878 CCCGTACCTGG 9888
|| || || ||
Sbjct 7389560 CCTGTCCCCGG 7389550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582995591314240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |