Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq161 136 5e-27 seq109 113 5e-20 seq49 111 2e-19 seq24 89.7 6e-13 >seq161 Length=5110746 Score = 136 bits (150), Expect = 5e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || Sbjct 1384235 TCCTTCGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGT 1384294 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 1384295 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1384354 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 1384355 GAGCTCATCTCCCGGGACGAGGGCCTCCAC 1384384 >seq109 Length=8785251 Score = 113 bits (124), Expect = 5e-20 Identities = 298/446 (67%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 9572 CGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTG 9629 || || || || || | |||| ||||| || ||| || ||||||||||||| |||| Sbjct 6755119 CGGTTAGTTGCCGCAACAACAATGATACCCGTATTTCCTT--CAAAACCATCCATTTCTG 6755062 Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9687 |||| || || |||| || || |||| ||||||||| || | | | | |||| | Sbjct 6755061 TCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCC 6755004 Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GC 9746 | ||| ||||||||||||||| ||||||| ||||| ||||| || ||| || Sbjct 6755003 TCTCTGCCGTCCCACGGCATCAATTTCATCAACAAAGACAATGCAGGGAGCATTCTCTTT 6754944 Query 9747 GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAA 9806 | | ||| ||| ||||| || || | || || |||||||| |||||||| || | Sbjct 6754943 GGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACCAACGAACATCTCAACGA 6754885 Query 9807 AGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCG 9865 | | | | ||| || | || || || ||| | |||||| ||||| || ||| Sbjct 6754884 ACTCAGAACCTGAA-ATGGAGAAAAAAGGAACACCTGCTTCACCAGCAATTGCCTTGGCA 6754826 Query 9866 AGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG 9925 || || || || || || ||||| ||| | || ||| |||| || || || Sbjct 6754825 AGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCC 6754766 Query 9926 CCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCT 9985 ||| | || | |||||||||| ||| ||||| ||||| | ||| || || | Sbjct 6754765 CCAACTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCACCACTTCCATGAAGTCCTGC 6754706 Query 9986 TTGGCGGCGTCAATCCCCTCAACATC 10011 ||||| | |||| || ||||||| Sbjct 6754705 TTGGCCTCATCAACACCAGCAACATC 6754680 >seq49 Length=4798478 Score = 111 bits (122), Expect = 2e-19 Identities = 197/280 (70%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||||||||||||||| ||||| || || || |||||||| || | ||||||||| || Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | |||||| | | ||| | ||||| ||||||||||||||||| || || ||||| Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973 Query 9733 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 9788 || || |||| | || || ||||| | |||| || || |||| || || || | Sbjct 1563974 AGG-TGCTTTT-GACTTCGCCTTCTCAAACAAGTCCC-TA-ACTCTTGAAGCACCGACGC 1564029 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| ||||||||| | | || | ||| || ||| || ||| || |||| Sbjct 1564030 CCACAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCAC 1564089 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || | || | || | ||| ||||| || || || || Sbjct 1564090 CAGCCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129 >seq24 Length=10012559 Score = 89.7 bits (98), Expect = 6e-13 Identities = 251/371 (68%), Gaps = 16/371 (4%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | ||||| || || | || ||| ||||| || ||||||||| | || Sbjct 7389912 ATCAAACCTTCCTGGCCGGAGCAAGGCAGAATCGAGGATTTCGGGACGATTCGTCACCGC 7389853 Query 9586 GATGACAA-CAATAC-CTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||||||| || | | ||||| | | ||||||||||||||| || | | || || Sbjct 7389852 GATGACAATCACTCCACTGTTCCC--ACTAAAACCATCCATCTCAGTGAGCAACTGATTC 7389795 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | ||||| || | |||||||| || | | | | |||| | | ||| | || | Sbjct 7389794 AATGTTTGCTCTCTCTCATCATTTCCT--CCTCCAATGCCAGTCCCTCTCTGCCTCCCAA 7389737 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAA 9759 | ||||||||||||||||||||||| | ||| || || ||||| || || | || Sbjct 7389736 CAGCATCAATCTCATCAATGAAGACCAAGCAAGG-CGA-ATTCGCCTTCGCCTTGTTGAA 7389679 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 || || || || | | ||||| || |||||||||||||| | || | || ||| Sbjct 7389678 AAGGTCACGCACCCTCGAAGCGCCTACGCCAACAAACATCTCAATGAACTCTGACCCGG- 7389620 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT-GGCTCGGGCGAGAAGAGTCTTA 9877 ||| | | ||| ||||| || ||| || ||||| | || || | | ||| ||||| Sbjct 7389619 ACAGCGAAAAGAAAGGGACCCCAGCTTCTCCTGCAATCGCCTTGGCCAACAAG-GTCTTC 7389561 Query 9878 CCCGTACCTGG 9888 || || || || Sbjct 7389560 CCTGTCCCCGG 7389550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582995591314240