Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq652 84.2 1e-11 >seq652 Length=2384379 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 || || ||||| || ||||| ||||| | | ||||| ||||| || | | ||| | Sbjct 1152001 CGGGTACCAAATTGGCCATTCGGCATGAGAAGGTTAATGTTGTTGCTGCCTACATAATCC 1151942 Query 65147 TGAGCCATTCCGATAATTG--CT-GCATTTAAACTCGCTTCACCGTGATGATATCCTGAA 65203 |||||||||||||| || | || ||| | ||| |||||||||||| ||| ||||| Sbjct 1151941 TGAGCCATTCCGATTATGGTACTAGCA---AGACTTTGTTCACCGTGATGGTATGCTGAA 1151885 Query 65204 TGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTA 65263 || || || ||||| ||| ||| || |||| || ||| | |||||| |||| Sbjct 1151884 TGCTCGGATACATAACCAGAAAACTGGGCAATCTTCGCTTCTTTGACGAAATTCCTTTTG 1151825 Query 65264 AAT--GCAGAATACAATATT 65281 ||| |||||| | ||| || Sbjct 1151824 AATGAGCAGAAAAGAATTTT 1151805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235575515396400