Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq161 253 2e-62 >seq161 Length=5110746 Score = 253 bits (280), Expect = 2e-62 Identities = 616/915 (67%), Gaps = 21/915 (2%) Strand=Plus/Plus Query 59514 AAGATGACGGACCCTATTCTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGG 59573 |||| || ||| || |||| || |||| | | | |||||| | || ||||| | | Sbjct 1383780 AAGAGGA-GGAGCCCCTTCTGGCCCCGAACCCGGACCGTTTCTGCATGTTCCCTATCCAG 1383838 Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||| | | |||| |||| ||||| || | || |||||| ||| ||||||| Sbjct 1383839 TACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAG 1383898 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 |||||||| || ||||| | |||||| |||| ||||||||| || ||| Sbjct 1383899 GTTGACCTCTCCCAGGACCTCCGTCACTGGGACTCCCTCACCGACGACGAGCGCCACTTC 1383958 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 ||| |||| ||||||||||| || || || || || | || || | | | Sbjct 1383959 GTCACCCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCC 1384018 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TC 59812 | ||| ||||| |||||| | |||||||||| | ||||||| | ||| || Sbjct 1384019 GTCCGCTTCATGAAGGAGGTCCAGCTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATC 1384078 Query 59813 GTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGA 59872 | || |||| ||||||||||||| |||| ||| | |||| | | |||||||| Sbjct 1384079 GC-CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACGTCAAGGA 1384137 Query 59873 TCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAA 59932 | | ||||||| | || ||||| || | || || |||||| || | || Sbjct 1384138 CTCCGCCGAGAAGGACCGCCTCTTCCGCGCGGTCGACACCGTCCCCGCCGTCGCTCGCAA 1384197 Query 59933 AGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCATTTGCACAACGTCTCATA 59990 || || |||||| | | ||| | || | | ||| || || || | || ||| | Sbjct 1384198 GGCGGACTGGGCCCTCCGCTGGGTCGACGGCGCCGAG--TCCTTCGCCGAGCGCCTCCTC 1384255 Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || || || ||||| || || ||||||||||| ||| ||||| || || ||||||||| Sbjct 1384256 GCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGTTTCTGCGCCATCTTCTGGCTC 1384315 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| |||||||||||||| || | ||||| |||||||| || |||||||||||| Sbjct 1384316 AAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCTCATCTCCCGGGACGAG 1384375 Query 60111 GGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAA--ATGCCCT 60167 |||||||| || || || || | |||||| || | || ||| | | ||| Sbjct 1384376 GGCCTCCACTGCGACTTCGC-CTGCCTGCTCTACTCGCTGCT----GAAGAGGAAGCCGA 1384430 Query 60168 TCCA--AGGATATTCACAAGATTGTTC-AGTGGGCTTGTGAAGTGGAGAGCGAGTTCATC 60224 | | || | | ||| || | | || | || || | ||||| |||||| || Sbjct 1384431 GCGAGGAGCGGGTGCGGGGGATCGTGCGCGAGGCCGTG-GACATCGAGAGGGAGTTCGTC 1384489 Query 60225 ACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA-GAAATGACGCAGTACAT 60283 || ||||| || ||| || | || ||| || | ||| ||| |||||||| Sbjct 1384490 TGCGACGCGCTCCCGTGCGCCCTGGTGGGGATGAAC-CGGGACCTCATGGGCCAGTACAT 1384548 Query 60284 TCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAA 60343 |||| ||||| ||||| ||| | | | | | | || || ||| |||| Sbjct 1384549 CGAGTTCGTCGCCGACCGTCTCCTCGGCGCCCTCGACTACGGGAAGATGTACAGCGTCCC 1384608 Query 60344 TAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAA 60403 ||||| ||||||||||||||| ||||||| || | ||||||||||||||||| ||||| Sbjct 1384609 GAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAA 1384668 Query 60404 GCGGGTCGGGGATTA 60418 |||||||||||| || Sbjct 1384669 GCGGGTCGGGGAGTA 1384683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548275385773440