Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq161 167 3e-36 seq74 91.5 2e-13 seq77 84.2 2e-11 >seq161 Length=5110746 Score = 167 bits (184), Expect = 3e-36 Identities = 536/815 (66%), Gaps = 24/815 (3%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| || || |||||||||||||| | || ||||||| ||||||| Sbjct 1384683 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 1384624 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACT---GTGCC-ATGAG 74578 |||||||| |||||| | | ||| || |||| || | | | ||| | ||| Sbjct 1384623 CAGTCGAAGGGGTTCGGGACGCTGTACAT---CTTC-CCGTAGTCGAGGGCGCCGAGGAG 1384568 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTC-TCCCGCATCCATGCCGATGAGTT 74637 || || || || || | |||||||| ||| ||||| || || || | || Sbjct 1384567 ACGGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTC-ATCCCCACCAGGG 1384509 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCT 74697 |||||| || || ||| || ||||| ||||| | || ||| | || ||| Sbjct 1384508 CGCACGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCC 1384449 Query 74698 TGTGAATG---TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 | | || | | || ||| | |||| | ||||| ||| | || ||| Sbjct 1384448 CCCGCACCCGCTCCTCGCTCGG---CTTCCTCTTCAGCAGCGAGTAGAGCAGGCA-GGCG 1384393 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || || || ||| || || | | || | || ||||| || | || || ||| Sbjct 1384392 AAGTCGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGC 1384333 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 || || || |||||||| | ||| |||||||| ||||| || |||||||||||| Sbjct 1384332 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCC 1384273 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTC 74933 ||||| || || ||||||| ||||| | ||||| | | | | ||| || || | Sbjct 1384272 TCGACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGACTCGGC-GCCGTCGACCCAG-C 1384215 Query 74934 TGA--GCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGC 74991 || ||||| || || || || ||| || ||||| || |||| ||| ||||||||| Sbjct 1384214 GGAGGGCCCAGTCCGCCTTGCGAGCGACGGCGGGGACGGTGTCGACCGCGCGGAAGAGGC 1384155 Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 ||||||| ||| ||||||||| | || | | || |||| |||| || | Sbjct 1384154 GGTCCTTCTCGGCGGAGTCCTTGACGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGT 1384095 Query 75052 GAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA 75110 | || |||| || ||| |||| | ||||||| | || ||||| | | ||| || Sbjct 1384094 GGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGAGCTGGACC 1384036 Query 75111 TCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAA 75170 ||||| || | | ||| ||||| | |||||||||||| ||||||||||| || Sbjct 1384035 TCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAG 1383976 Query 75171 GCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGG 75230 || || | ||| ||||||||||| ||||| ||||| |||||| | ||| Sbjct 1383975 GCGAGGATGTGGGTGACGAAGTGGCGCTCGTCGTCGGTGAGGGAGTCCCAGTGACGGAGG 1383916 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||| | | |||| ||||||| | |||||||| Sbjct 1383915 TCCTGGGAGAGGTCAACCTCCTCGGCGGTCCAGAA 1383881 >seq74 Length=10145792 Score = 91.5 bits (100), Expect = 2e-13 Identities = 198/292 (68%), Gaps = 17/292 (6%) Strand=Plus/Plus Query 124551 TGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTG 124610 ||||||||||| | |||||| || | ||||||||| | ||| ||||||||| || | Sbjct 6510040 TGCTGCAACATCATCCACATAGCCTCCACGTAGTCCCCAGCGAACCCCCAGTCCCGGGAG 6510099 Query 124611 GCATCCAGGTTTCCGAG------CTCGATTGGCTTGGCCG-TCTTGTTCCACTCCGCCAA 124663 || | ||| || || || || | | || | ||| ||||| ||| | || | Sbjct 6510100 GCCTGCAGATTCCCCAGGAACAGCTTGCTCTGCA-GCCCGATCTTGATCCGCCCCAC--- 6510155 Query 124664 ACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTT 124720 | || | || ||||| || ||||| || |||| || || | | ||||||||||| Sbjct 6510156 AGCCCGCGTGATCTTCCGGGTCACGAAGTTCTCG---CCTCGCCTCGGGGACTCGTGGTT 6510212 Query 124721 GAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCA 124780 |||||| || || | ||||| |||| ||||| | |||||| ||||| || ||| Sbjct 6510213 GAACAGGATCCCGTTGCACGCGAACAGGCCGTAGGCCTCGCGATAGTTCACGGTGTACCA 6510272 Query 124781 ATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTG 124832 | | | | ||||||| || | |||||| || |||| ||| |||||| Sbjct 6510273 GTGCGCGGCGCACTTGGACGCGGCGTAGGGGGACCGCGGGTGGAACGGGGTG 6510324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 178/265 (67%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCC 124566 ||||| ||| ||||| | | |||| | || || || | ||||||| ||| | || Sbjct 5920927 TGTGCAACTCCCCCGTCGCTACCACGTAGTCGTCCGGGTTTTCTTGCTGCAGCATCATCC 5920986 Query 124567 ACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCG- 124625 |||| || | ||||||||| | || ||||||||| || |||| ||||| || || Sbjct 5920987 ACATCGCCTCCACGTAGTCCCCAGCAAACCCCCAGTCCCGGGTGGCCTCCAGATTCCCAG 5921046 Query 124626 ----AGCTCGATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCG 124681 |||| | | || || ||||| ||| | || | | || || ||||| || Sbjct 5921047 GAACAGCTTGCTCTGCAGCCCCATCTTGATCCGCCCCAC---AGCCCTCGTGATCTTCCG 5921103 Query 124682 CGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGC 124741 ||||| || | | || || | ||||||||||||||||| || || | || || Sbjct 5921104 GGTCACGAAGTTCGCGCCCCGCCTTGGGGACTCGTGGTTGAACAGGATCCCGTTGCAAGC 5921163 Query 124742 AAACATCCCGTACGACTCGCGGTAG 124766 |||| |||||| | |||||||||| Sbjct 5921164 GAACAGCCCGTAGGCCTCGCGGTAG 5921188 >seq77 Length=8408033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 2869575 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 2869634 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 2869635 ACTGAGCTACGAGAGC 2869650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546967180884800