Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq161 167 3e-36
seq74 91.5 2e-13
seq77 84.2 2e-11
>seq161
Length=5110746
Score = 167 bits (184), Expect = 3e-36
Identities = 536/815 (66%), Gaps = 24/815 (3%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || ||||||||||| || || |||||||||||||| | || ||||||| |||||||
Sbjct 1384683 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 1384624
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACT---GTGCC-ATGAG 74578
|||||||| |||||| | | ||| || |||| || | | | ||| | |||
Sbjct 1384623 CAGTCGAAGGGGTTCGGGACGCTGTACAT---CTTC-CCGTAGTCGAGGGCGCCGAGGAG 1384568
Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTC-TCCCGCATCCATGCCGATGAGTT 74637
|| || || || || | |||||||| ||| ||||| || || || | ||
Sbjct 1384567 ACGGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTC-ATCCCCACCAGGG 1384509
Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCT 74697
|||||| || || ||| || ||||| ||||| | || ||| | || |||
Sbjct 1384508 CGCACGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCC 1384449
Query 74698 TGTGAATG---TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753
| | || | | || ||| | |||| | ||||| ||| | || |||
Sbjct 1384448 CCCGCACCCGCTCCTCGCTCGG---CTTCCTCTTCAGCAGCGAGTAGAGCAGGCA-GGCG 1384393
Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813
|| || || ||| || || | | || | || ||||| || | || || |||
Sbjct 1384392 AAGTCGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGC 1384333
Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873
|| || || |||||||| | ||| |||||||| ||||| || ||||||||||||
Sbjct 1384332 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCC 1384273
Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTC 74933
||||| || || ||||||| ||||| | ||||| | | | | ||| || || |
Sbjct 1384272 TCGACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGACTCGGC-GCCGTCGACCCAG-C 1384215
Query 74934 TGA--GCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGC 74991
|| ||||| || || || || ||| || ||||| || |||| ||| |||||||||
Sbjct 1384214 GGAGGGCCCAGTCCGCCTTGCGAGCGACGGCGGGGACGGTGTCGACCGCGCGGAAGAGGC 1384155
Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051
||||||| ||| ||||||||| | || | | || |||| |||| || |
Sbjct 1384154 GGTCCTTCTCGGCGGAGTCCTTGACGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGT 1384095
Query 75052 GAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA 75110
| || |||| || ||| |||| | ||||||| | || ||||| | | ||| ||
Sbjct 1384094 GGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGAGCTGGACC 1384036
Query 75111 TCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAA 75170
||||| || | | ||| ||||| | |||||||||||| ||||||||||| ||
Sbjct 1384035 TCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAG 1383976
Query 75171 GCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGG 75230
|| || | ||| ||||||||||| ||||| ||||| |||||| | |||
Sbjct 1383975 GCGAGGATGTGGGTGACGAAGTGGCGCTCGTCGTCGGTGAGGGAGTCCCAGTGACGGAGG 1383916
Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265
||| | | |||| ||||||| | ||||||||
Sbjct 1383915 TCCTGGGAGAGGTCAACCTCCTCGGCGGTCCAGAA 1383881
>seq74
Length=10145792
Score = 91.5 bits (100), Expect = 2e-13
Identities = 198/292 (68%), Gaps = 17/292 (6%)
Strand=Plus/Plus
Query 124551 TGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTG 124610
||||||||||| | |||||| || | ||||||||| | ||| ||||||||| || |
Sbjct 6510040 TGCTGCAACATCATCCACATAGCCTCCACGTAGTCCCCAGCGAACCCCCAGTCCCGGGAG 6510099
Query 124611 GCATCCAGGTTTCCGAG------CTCGATTGGCTTGGCCG-TCTTGTTCCACTCCGCCAA 124663
|| | ||| || || || || | | || | ||| ||||| ||| | || |
Sbjct 6510100 GCCTGCAGATTCCCCAGGAACAGCTTGCTCTGCA-GCCCGATCTTGATCCGCCCCAC--- 6510155
Query 124664 ACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTT 124720
| || | || ||||| || ||||| || |||| || || | | |||||||||||
Sbjct 6510156 AGCCCGCGTGATCTTCCGGGTCACGAAGTTCTCG---CCTCGCCTCGGGGACTCGTGGTT 6510212
Query 124721 GAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCA 124780
|||||| || || | ||||| |||| ||||| | |||||| ||||| || |||
Sbjct 6510213 GAACAGGATCCCGTTGCACGCGAACAGGCCGTAGGCCTCGCGATAGTTCACGGTGTACCA 6510272
Query 124781 ATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTG 124832
| | | | ||||||| || | |||||| || |||| ||| ||||||
Sbjct 6510273 GTGCGCGGCGCACTTGGACGCGGCGTAGGGGGACCGCGGGTGGAACGGGGTG 6510324
Score = 84.2 bits (92), Expect = 2e-11
Identities = 178/265 (67%), Gaps = 8/265 (3%)
Strand=Plus/Plus
Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCC 124566
||||| ||| ||||| | | |||| | || || || | ||||||| ||| | ||
Sbjct 5920927 TGTGCAACTCCCCCGTCGCTACCACGTAGTCGTCCGGGTTTTCTTGCTGCAGCATCATCC 5920986
Query 124567 ACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCG- 124625
|||| || | ||||||||| | || ||||||||| || |||| ||||| || ||
Sbjct 5920987 ACATCGCCTCCACGTAGTCCCCAGCAAACCCCCAGTCCCGGGTGGCCTCCAGATTCCCAG 5921046
Query 124626 ----AGCTCGATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCG 124681
|||| | | || || ||||| ||| | || | | || || ||||| ||
Sbjct 5921047 GAACAGCTTGCTCTGCAGCCCCATCTTGATCCGCCCCAC---AGCCCTCGTGATCTTCCG 5921103
Query 124682 CGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGC 124741
||||| || | | || || | ||||||||||||||||| || || | || ||
Sbjct 5921104 GGTCACGAAGTTCGCGCCCCGCCTTGGGGACTCGTGGTTGAACAGGATCCCGTTGCAAGC 5921163
Query 124742 AAACATCCCGTACGACTCGCGGTAG 124766
|||| |||||| | ||||||||||
Sbjct 5921164 GAACAGCCCGTAGGCCTCGCGGTAG 5921188
>seq77
Length=8408033
Score = 84.2 bits (92), Expect = 2e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681
|||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||
Sbjct 2869575 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 2869634
Query 79682 ATTGAGCTACGAAAGC 79697
| |||||||||| |||
Sbjct 2869635 ACTGAGCTACGAGAGC 2869650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546967180884800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |