Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq31086 84.2 7e-12 seq35365 82.4 2e-11 >seq31086 Length=5831 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 21142 TTTCAAGTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGG 21201 ||||| ||| ||||||||| |||||||||| ||||||||||| |||||| | || Sbjct 5404 TTTCAGCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGG 5463 Query 21202 TTCGAATCCTGTCTCCGCAAC 21222 ||| ||||||||||||||||| Sbjct 5464 TTCAAATCCTGTCTCCGCAAC 5484 >seq35365 Length=745 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 638 CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 697 Query 21210 CTGTCTCCGCAAC 21222 | ||||||||||| Sbjct 698 CCGTCTCCGCAAC 710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162454594974768