Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq49 114 9e-21
seq203 95.1 9e-15
seq652 82.4 5e-11
>seq49
Length=4798478
Score = 114 bits (126), Expect = 9e-21
Identities = 165/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||||||||||||||| || |||||||||||| || || | || || || ||| |
Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| || |||| |||||| ||||| ||||| ||||| |||| |||
Sbjct 2840917 TGACACCATCGACAAC--GTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGAT 2840974
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| || | ||||||||||| ||||| | || || | | | ||| | ||||||
Sbjct 2840975 CAGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTAC 2841034
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||| |||||| |||| | || |||||| |||| || | || |||
Sbjct 2841035 AACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTGCGCCTGAGGGGAGGC 2841085
Score = 109 bits (120), Expect = 4e-19
Identities = 156/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||||||||||||||| || |||||||||||| || || | || || || ||| |
Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| || |||| |||||| |||||| ||||| ||||| |||| |||
Sbjct 2846905 TGACACCATCGACAAC--GTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGAT 2846962
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| || | |||||||| || ||||| | || || | | | ||| | ||||||
Sbjct 2846963 CAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTAC 2847022
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004
|||||||| || ||| |||| | || |||||| ||||
Sbjct 2847023 AACATCCAGAAGGAGTCCACTCTTCACTTGGTTCTGCG 2847060
Score = 105 bits (116), Expect = 5e-18
Identities = 163/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| ||||| || || |||||||||||| || || | || || || ||| |
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || ||||| |||||| |||||| ||||||||||| |||| |||
Sbjct 2869973 TGACACTATCGACAAT--GTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGAT 2870030
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| || | |||||||| || ||||| | || || | | | || | |||||
Sbjct 2870031 CAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTAT 2870090
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||| |||||| ||| | || |||||| ||||| || | || |||
Sbjct 2870091 AACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGGC 2870141
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||||||||| ||||| ||||| || ||| || | || ||||| ||| |
Sbjct 2841086 ATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTTTGGAAGTCGAGAGCTCG 2841145
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| ||||| | ||| |||||| || ||| ||||| ||||| |||| || |
Sbjct 2841146 GACACGATTGATAAT--GTCAAAGCGAAGATACAGGACAAGGAAGGCATTCCCCCAGACC 2841203
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| ||||| |||||||| || ||||| | || || | || | || |||||||||
Sbjct 2841204 AGCAGCGGTTGATTTTTGCAGGGAAACAGCTCGAGGATGGCCGGACACTGGCCGATTACA 2841263
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| || ||||| ||| || | ||| | || | ||| ||||||| ||
Sbjct 2841264 ATATTCAAAAGGAGTCGACGCTCCATCTTGTCCTCCGTCTGCGTGGTGG 2841312
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| |||||||||| ||||| ||||| || ||| || | || || || ||| |
Sbjct 2847074 ATGCAGGTTTTTGTGAAGACTCTGACTGGCAAGACTATCACCTTGGAAGTTGAGAGCTCG 2847133
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| | ||| |||||| || ||| ||||| || || |||| || |
Sbjct 2847134 GACACGATTGATAAT--GTCAAAGCGAAGATACAGGACAAGGAGGGCATTCCCCCAGACC 2847191
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| ||||| |||||||| || || ||| | | || | || | || |||||||||
Sbjct 2847192 AGCAGCGGTTGATTTTTGCAGGGAAGCAACTCGGGGATGGCCGGACACTGGCCGATTACA 2847251
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| ||||| ||| ||| | ||| | || | ||| ||||||| ||
Sbjct 2847252 ACATTCAAAAGGAGTCGACTCTCCATCTTGTCCTCCGTCTGCGTGGTGG 2847300
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || |||||||| ||||| || || || ||||| |||| || || || ||
Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || ||||| || || ||||| ||||||||||| |||| || |
Sbjct 2869746 GATACCATTGACAAT--GTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCAGACC 2869803
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| ||||| |||||||| ||||| ||| | || || | || | | | || ||||
Sbjct 2869804 AGCAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACA 2869863
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||| || ||| | || ||||| | |||||| | || ||
Sbjct 2869864 ACATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTTTGAGAGGAGG 2869912
>seq203
Length=8626763
Score = 95.1 bits (104), Expect = 9e-15
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| ||||| |||||||||||||| ||||| | || ||||||||| ||
Sbjct 5730614 ATGCAGATTTTCGTGAAGACTCTTACTGGGAAGACAATTACTCTCGAGGTCGAAAGCTCC 5730673
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| || || ||||| || || ||||| |||||||| ||| |||| ||| |
Sbjct 5730674 GACACCATCGACAAT--GTGAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCGGACC 5730731
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| || | || ||||| || |||||| | || || | | | || |||| ||||
Sbjct 5730732 AGCAAAGGCTGATCTTTGCGGGTAAACAACTTGAAGATGGCAGGACACTGGCCGACTACA 5730791
Query 27968 ACATCCAAAAAGA 27980
| |||||||| ||
Sbjct 5730792 ATATCCAAAAGGA 5730804
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| |||||||| || || |||||||| ||||| | || || || ||| |
Sbjct 5730158 ATGCAAATCTTTGTGAAGACCCTCACTGGGAAGACAATTACCCTAGAAGTTGAGAGCTCT 5730217
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| ||||| || || ||||| || ||| |||| ||| |
Sbjct 5730218 GACACCATTGACAAT--GTCAAGGCTAAGATCCAAGACAAGGAGGGTATTCCACCGGACC 5730275
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966
|||| || | |||||||| ||||| || | || || | | | ||||| | || |||
Sbjct 5730276 AGCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAAGATGGCAGGACGCTTG-CGGACTAC 5730334
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| ||||| ||| | || ||||| | |||||||| || ||
Sbjct 5730335 AACATCCAGAAAGAATCCACACTCCACTTGGTGCTCCGTTTGCGGGGTGG 5730384
>seq652
Length=2384379
Score = 82.4 bits (90), Expect = 5e-11
Identities = 158/231 (68%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| |||||||| || ||||| || || || || || | || || || || |
Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| || ||||| || || ||| || ||||| || || | || ||
Sbjct 465573 AGACACCATCGACAAT--GTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGAC 465630
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| || | ||||||||||| || ||| |||| |||| | | | || |||||||
Sbjct 465631 CAGCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTAT 465690
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||| |||||| ||| |||| ||||| | ||| ||||||| |||
Sbjct 465691 AACATCCAGAAAGAGTCAACTCTGCACTTGGTCCTTCGTCTGCGTGGTGGC 465741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355704634632552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |