Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq49 114 9e-21 seq203 95.1 9e-15 seq652 82.4 5e-11 >seq49 Length=4798478 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||| || |||||||||||| || || | || || || ||| | Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| |||||| ||||| ||||| ||||| |||| ||| Sbjct 2840917 TGACACCATCGACAAC--GTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGAT 2840974 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | ||||||||||| ||||| | || || | | | ||| | |||||| Sbjct 2840975 CAGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTAC 2841034 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| |||||| |||| | || |||||| |||| || | || ||| Sbjct 2841035 AACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTGCGCCTGAGGGGAGGC 2841085 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||| || |||||||||||| || || | || || || ||| | Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| |||||| |||||| ||||| ||||| |||| ||| Sbjct 2846905 TGACACCATCGACAAC--GTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGAT 2846962 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | |||||||| || ||||| | || || | | | ||| | |||||| Sbjct 2846963 CAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTAC 2847022 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||||||| || ||| |||| | || |||||| |||| Sbjct 2847023 AACATCCAGAAGGAGTCCACTCTTCACTTGGTTCTGCG 2847060 Score = 105 bits (116), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || || |||||||||||| || || | || || || ||| | Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| |||||| |||||| ||||||||||| |||| ||| Sbjct 2869973 TGACACTATCGACAAT--GTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGAT 2870030 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | |||||||| || ||||| | || || | | | || | ||||| Sbjct 2870031 CAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTAT 2870090 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| |||||| ||| | || |||||| ||||| || | || ||| Sbjct 2870091 AACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGGC 2870141 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| ||||| ||||| || ||| || | || ||||| ||| | Sbjct 2841086 ATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTTTGGAAGTCGAGAGCTCG 2841145 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| | ||| |||||| || ||| ||||| ||||| |||| || | Sbjct 2841146 GACACGATTGATAAT--GTCAAAGCGAAGATACAGGACAAGGAAGGCATTCCCCCAGACC 2841203 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||| |||||||| || ||||| | || || | || | || ||||||||| Sbjct 2841204 AGCAGCGGTTGATTTTTGCAGGGAAACAGCTCGAGGATGGCCGGACACTGGCCGATTACA 2841263 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||| ||| || | ||| | || | ||| ||||||| || Sbjct 2841264 ATATTCAAAAGGAGTCGACGCTCCATCTTGTCCTCCGTCTGCGTGGTGG 2841312 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||| ||||| ||||| || ||| || | || || || ||| | Sbjct 2847074 ATGCAGGTTTTTGTGAAGACTCTGACTGGCAAGACTATCACCTTGGAAGTTGAGAGCTCG 2847133 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| |||||| || ||| ||||| || || |||| || | Sbjct 2847134 GACACGATTGATAAT--GTCAAAGCGAAGATACAGGACAAGGAGGGCATTCCCCCAGACC 2847191 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||| |||||||| || || ||| | | || | || | || ||||||||| Sbjct 2847192 AGCAGCGGTTGATTTTTGCAGGGAAGCAACTCGGGGATGGCCGGACACTGGCCGATTACA 2847251 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| ||| | ||| | || | ||| ||||||| || Sbjct 2847252 ACATTCAAAAGGAGTCGACTCTCCATCTTGTCCTCCGTCTGCGTGGTGG 2847300 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||||| || || || ||||| |||| || || || || Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||||| ||||||||||| |||| || | Sbjct 2869746 GATACCATTGACAAT--GTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCAGACC 2869803 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||| |||||||| ||||| ||| | || || | || | | | || |||| Sbjct 2869804 AGCAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACA 2869863 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| | || ||||| | |||||| | || || Sbjct 2869864 ACATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTTTGAGAGGAGG 2869912 >seq203 Length=8626763 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| |||||||||||||| ||||| | || ||||||||| || Sbjct 5730614 ATGCAGATTTTCGTGAAGACTCTTACTGGGAAGACAATTACTCTCGAGGTCGAAAGCTCC 5730673 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||||| |||||||| ||| |||| ||| | Sbjct 5730674 GACACCATCGACAAT--GTGAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCGGACC 5730731 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || |||||| | || || | | | || |||| |||| Sbjct 5730732 AGCAAAGGCTGATCTTTGCGGGTAAACAACTTGAAGATGGCAGGACACTGGCCGACTACA 5730791 Query 27968 ACATCCAAAAAGA 27980 | |||||||| || Sbjct 5730792 ATATCCAAAAGGA 5730804 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || || |||||||| ||||| | || || || ||| | Sbjct 5730158 ATGCAAATCTTTGTGAAGACCCTCACTGGGAAGACAATTACCCTAGAAGTTGAGAGCTCT 5730217 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || ||| |||| ||| | Sbjct 5730218 GACACCATTGACAAT--GTCAAGGCTAAGATCCAAGACAAGGAGGGTATTCCACCGGACC 5730275 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| || | |||||||| ||||| || | || || | | | ||||| | || ||| Sbjct 5730276 AGCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAAGATGGCAGGACGCTTG-CGGACTAC 5730334 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| ||| | || ||||| | |||||||| || || Sbjct 5730335 AACATCCAGAAAGAATCCACACTCCACTTGGTGCTCCGTTTGCGGGGTGG 5730384 >seq652 Length=2384379 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| || ||||| || || || || || | || || || || | Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| || || ||| || ||||| || || | || || Sbjct 465573 AGACACCATCGACAAT--GTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGAC 465630 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | ||||||||||| || ||| |||| |||| | | | || ||||||| Sbjct 465631 CAGCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTAT 465690 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| |||||| ||| |||| ||||| | ||| ||||||| ||| Sbjct 465691 AACATCCAGAAAGAGTCAACTCTGCACTTGGTCCTTCGTCTGCGTGGTGGC 465741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355704634632552