Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq203 104 2e-17 seq569 100 2e-16 seq49 100 2e-16 seq87 98.7 9e-16 seq116 91.5 1e-13 seq652 87.8 2e-12 >seq203 Length=8626763 Score = 104 bits (114), Expect = 2e-17 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | |||||| || || || ||| || || || |||||||| Sbjct 5730160 CATGCCTCCCCTGAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTATAATC 5730101 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGG 39172 ||| | ||||| | || |||||||| ||||| ||||| ||||| | |||||||| ||| Sbjct 5730100 GGCCAAGGTTCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGG 5730041 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGAC 39231 ||| | || || |||| | ||| ||| || ||| | | | | || ||| Sbjct 5730040 AGGGATCCCT-TCCTTGT-CTTGAATTTTTGCTTTTACATTATCGATTGTGTCGGAGCTT 5729983 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| || | ||||| | || ||||| || ||||| |||||||||||||||| Sbjct 5729982 TCCACCTCAAGGGTGATTGTCTTGCCCGTAAGGGTTTTCACAAAGATTTGCATCT 5729928 >seq569 Length=4400913 Score = 100 bits (110), Expect = 2e-16 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || |||| || ||||| ||||| || || Sbjct 2057987 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2058046 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||||| || | || ||| |||||| ||| || |||| ||| Sbjct 2058047 GATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2058105 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || ||||| || ||||| | Sbjct 2058106 TGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTCA 2058165 Query 39272 CAAAGATTTGCATCTTTACGCCG 39294 | ||||| |||||||| ||||| Sbjct 2058166 CGAAGATCTGCATCTT--CGCCG 2058186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || |||| || ||||| ||||| || || Sbjct 2054736 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2054795 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || |||||| ||| ||| || |||| ||| Sbjct 2054796 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTGA-CGT 2054854 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || ||||| || ||||| | Sbjct 2054855 TGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGTTTTCA 2054914 Query 39272 CAAAGATTTGCATCTTTAC 39290 | ||||| |||||||| || Sbjct 2054915 CGAAGATCTGCATCTTCAC 2054933 >seq49 Length=4798478 Score = 100 bits (110), Expect = 2e-16 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| ||||| ||||| |||||||| ||||| || | || || ||||| Sbjct 2841289 ATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCCAGTGTCCGGCCATCCTCGAGCTG 2841230 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || ||||| || | ||||||||||| | ||| | || || |||||| || || Sbjct 2841229 TTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGTATCTT 2841170 Query 39201 CTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCC 39257 | ||||| | | | ||| || ||| ||| || |||| |||||| | || || Sbjct 2841169 CGCTTTGACATTATCAATCGTGTCCGAGCT---CTCGACTTCCAAAGTGATAGTCTTGCC 2841113 Query 39258 CGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| || ||||| Sbjct 2841112 AGTCAGAGTCTTCACAAAAATCTGCAT 2841086 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||| || || || |||||| || || |||||||| Sbjct 2870144 CATGCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATC 2870085 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || | | || || |||||||| || ||||| ||||| | |||||| || | Sbjct 2870084 TGCCAGAGTCCTACCATCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGG 2870025 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCG 39229 ||| | || ||||||||| ||| ||| || ||||| | | | || || |||| Sbjct 2870024 GGGAATGCCTTCTTTGTCC-TGAATTTTTGCTTTGACATTGTCGATAGTGTCAGAGCTC- 2869967 Query 39230 ACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| ||||| |||| || || || || || |||||||||||||| Sbjct 2869966 --TCAACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 2869914 >seq87 Length=12262769 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 7257228 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGC 7257287 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||| | ||| | || ||| |||||| ||| || Sbjct 7257288 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 7257347 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | || ||||||||||| || || | || || | || ||||| Sbjct 7257348 GCCTTCACATTGTCGATGGTGTCGCTCGACTCGACCTCGAGGGTTATGGTCTTCCCCGTT 7257407 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTT 39288 || ||||| || ||||| ||||||||| Sbjct 7257408 AGGGTTTTCACGAAGATCTGCATCTTT 7257434 >seq116 Length=10441785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || || || |||||||| || || | |||| || ||||| Sbjct 4712096 TGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCTGCCGTCCTCGAGCTGC 4712155 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || ||||||||||| |||| || | || ||| |||||| ||| || Sbjct 4712156 TTTCCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTA 4712215 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || ||| |||||| |||| |||||| | || || || Sbjct 4712216 GCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGCGTGATGGTCTTGCCGGT 4712274 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || ||||| ||||| Sbjct 4712275 CAGGGTCTTGACGAAGATCTGCAT 4712298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || ||||| |||||||| || || | |||| || ||||| Sbjct 4726491 TGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGGGTCCTACCGTCCTCGAGCTGC 4726432 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || ||||||||||| || | || | || ||| |||||| |||||| Sbjct 4726431 TTTCCAGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATTTTG 4726372 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| ||| ||| || || | |||||| | || || || Sbjct 4726371 GCCTTGA-CGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGCGTGATGGTCTTCCCGGT 4726313 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCCGAGC 39297 ||| || || || ||||| ||||| | ||| |||| Sbjct 4726312 CAGGGTCTTGACGAAGATCTGCATGCCTCCGCGGAGC 4726276 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| |||||| || || || |||||||| || |||| |||| || ||||| Sbjct 4726719 TGGAGCGTCGACTCTTTCTGGATGTTGTAATCGGCGAGGGTTCTGCCGTCCTCGAGCTGC 4726660 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || ||||||||||| || | || | || ||| || ||| |||||| Sbjct 4726659 TTTCCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATTTTG 4726600 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| ||| ||| || || | |||||| | || || || Sbjct 4726599 GCCTTGA-CGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGCGTGATGGTCTTGCCGGT 4726541 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 4726540 TAGGGTCTTGACGAAGATCTGCAT 4726517 >seq652 Length=2384379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/243 (68%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| || || || || | |||||| || || ||| ||| || || || Sbjct 465297 AAATATCTGCATGCCCCCCCTCAATCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGAT 465238 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 |||||||| || | || | | || ||||| ||||| || ||||| ||||| | || Sbjct 465237 GTTATAATCCGCCAAAGTCCTACCATCCTCAAGTTGTTTCCCGGCAAAGATAAGCCTTTG 465178 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 ||| || | ||| | || || |||||| |||||| ||||| | | | || || Sbjct 465177 CTGATCTGGGGGAATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTC 465118 Query 39225 ---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTG 39281 |||| || || |||| ||||| | || || || || || || ||||||||||| Sbjct 465117 AGAGCTC---TCAACTTCCAAGGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTG 465061 Query 39282 CAT 39284 ||| Sbjct 465060 CAT 465058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429355168475288