Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq49 114 9e-21 seq652 95.1 8e-15 seq116 95.1 8e-15 seq203 86.0 4e-12 >seq49 Length=4798478 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || ||||| || || ||||| |||||| | |||||||| | | Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | ||| |||||| ||||| ||||| | || || ||||| Sbjct 2840917 TGACACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2840976 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| ||||| || ||||| | | ||||| | |||||||| Sbjct 2840977 GCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2841036 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||||||||| | || || ||| Sbjct 2841037 CATCCAGAAAGAGTCCACTCTTCACTTGGTT 2841067 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || ||||| || || ||||| |||||| | |||||||| | | Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | ||| ||||||| ||||| ||||| | || || ||||| Sbjct 2846905 TGACACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2846964 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||| || ||||| | | ||||| | |||||||| Sbjct 2846965 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2847024 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || |||||||| | || || ||| Sbjct 2847025 CATCCAGAAGGAGTCCACTCTTCACTTGGTT 2847055 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||||| || || ||||| |||||| | |||||||| | | Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | ||| |||||| || ||||||||||| | || || |||| Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAA-TTCAGGACAAAGAAGGCATTCCCCCGGATC 2870031 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || ||||| || ||||| | | ||| | | ||||| | Sbjct 2870032 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 2870091 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || |||||||| || | || || ||| Sbjct 2870092 ACATCCAGAAAGAGTCGACTCTTCACTTGGTT 2870123 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || || || || |||||| | ||||| || | || Sbjct 2841086 ATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTTTGGAAGTCGAGAGCTCG 2841145 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || || ||||| ||||| | || ||||| || Sbjct 2841146 GACACGATTGATAATGTCAAAGC-GAAGATACAGGACAAGGAAGGCATTCCCCCAGACCA 2841204 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| || ||||| || || || | || || | | ||||||||| Sbjct 2841205 GCAGCGGTTGATTTTTGCAGGGAAACAGCTCGAGGATGGCCGGACACTGGCCGATTACAA 2841264 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 2841265 TATTCAAAAGGAGTCGAC 2841282 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || || || ||||| ||||| | || Sbjct 2845980 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAAAGCTCG 2846039 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || |||||||| || | || || || || Sbjct 2846040 GACACGATTGATAATGTCAAGGCCAAGA-TTCAAGACAAAGAGGGAATCCCTCCTGACCA 2846098 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | |||||||| Sbjct 2846099 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGCACCCTGGCTGATTACAA 2846158 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| || ||||| | ||||| || Sbjct 2846159 CATCCAAAAGGAATCCACCCTTCATTTGGT 2846188 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || || || ||||| ||||| | || Sbjct 2840174 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAAAGCTCG 2840233 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||||| ||| | || | || | || ||||| || || | || || || || Sbjct 2840234 GACACGGTTGATAATGTCAAGGCCAAGA-TTCAAGACAAGGAGGGAATCCCTCCTGACCA 2840292 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | |||||||| Sbjct 2840293 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGCACCCTGGCTGATTACAA 2840352 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| || || || |||| || ||| Sbjct 2840353 CATCCAAAAGGAATCAACCCTACACTTGGTT 2840383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || || ||||| || || || | Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| | ||||||||||| | || ||||| || Sbjct 2869746 GATACCATTGACAATGTGAAGGCCAAAA-TCCAGGACAAAGAAGGGATTCCCCCAGACCA 2869804 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| || || ||||| || || | || || ||| || ||||| Sbjct 2869805 GCAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACAA 2869864 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| || ||||| | || || || | | ||| |||||||| Sbjct 2869865 CATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTTTGAGAGGAGGA 2869913 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| |||| || || || || || || || || ||||| | |||||||| | || Sbjct 2847074 ATGCAGGTTTTTGTGAAGACTCTGACTGGCAAGACTATCACCTTGGAAGTTGAGAGCTCG 2847133 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| || || | || ||||| || Sbjct 2847134 GACACGATTGATAATGTCAAAGCGAAGA-TACAGGACAAGGAGGGCATTCCCCCAGACCA 2847192 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| || || ||||| | || | || || | | ||||||||| Sbjct 2847193 GCAGCGGTTGATTTTTGCAGGGAAGCAACTCGGGGATGGCCGGACACTGGCCGATTACAA 2847252 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 2847253 CATTCAAAAGGAGTCGAC 2847270 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || || || || || ||||| | || Sbjct 2869458 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTTGAGGTTGAAAGCTCG 2869517 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||||| ||| | || | || | || ||||| || || | || || || || Sbjct 2869518 GACACGGTTGATAATGTCAAGGCCAAGA-TTCAAGACAAGGAGGGAATCCCTCCTGACCA 2869576 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | |||||||| Sbjct 2869577 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGCACCCTGGCTGATTACAA 2869636 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || |||| || ||| Sbjct 2869637 CATCCAGAAGGAATCAACCCTACACTTGGTT 2869667 >seq652 Length=2384379 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || || || ||||| || |||||||| || || || | Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | ||||| || || | || ||||| | Sbjct 465573 AGACACCATCGACAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCTCCAGACC 465631 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || |||||||| || ||||||||||||| | | || | | |||||| | Sbjct 465632 AGCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTATA 465691 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 465692 ACATCCAGAAAGAGTCAAC 465710 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || || ||| | ||||| || | || Sbjct 465286 ATGCAGATATTTGTCAAGACCCTTACCGGGAAGACCATAACTTTGGAAGTCGAGAGCTCG 465345 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || ||||| ||| | ||| | || | | ||||| ||||| | || |||||||| Sbjct 465346 GATACCGTTGATAATGTCAAAGCTAAGA-TACAGGACAAGGAAGGCATTCCCCCAGATCA 465404 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || || || || | || || | | |||||||| Sbjct 465405 GCAGAGGTTGATTTTTGCTGGGAAGCAGCTCGAGGATGGCCGGACACTGGCGGATTACAA 465464 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| ||||| ||||| || ||||| Sbjct 465465 CATCCAAAAGGAGTCAACTCTACAT 465489 >seq116 Length=10441785 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || ||||| ||||| ||||| || || | || Sbjct 4712070 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAAACCATCACGCTCGAGGTCGAGAGCTCG 4712011 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | ||||| ||||| Sbjct 4712010 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAG 4711951 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || || |||| | || | | |||||||||| Sbjct 4711950 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCCTCGCCGATTACAAC 4711891 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 4711890 ATCCAGAAGGAGTCCAC 4711874 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || | | Sbjct 4726517 ATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATCACGCTCGAGGTCGAGAGCTCC 4726576 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || || || || | ||||| ||||| Sbjct 4726577 GACACGATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 4726636 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || || |||| | || | | |||||||||| Sbjct 4726637 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTCGCCGATTACAAC 4726696 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 4726697 ATCCAGAAAGAGTCGAC 4726713 >seq203 Length=8626763 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || ||||| ||||||||||| ||||| | || || || | | Sbjct 5730841 AATGCAGATTTTTGTCAAGACCCTGACGGGAAAAACCATCACCTTGGAGGTCGAGAGCTC 5730900 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| |||| | ||| || ||||| || || | || || || | Sbjct 5730901 GGACACGATTGATAATGTTAAGGC-AAAGATCCAAGACAAGGAGGGGATCCCACCGGACC 5730959 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || || ||||| || || ||||| || | | || | | || |||| Sbjct 5730960 AACAGAGACTGATCTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCTGACTACA 5731019 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 5731020 ACATTCAGAAGGAGTCTAC 5731038 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || || ||| | ||||| || | || Sbjct 5730386 ATGCAGATTTTCGTGAAGACGCTTACCGGGAAGACCATAACTTTGGAAGTGGAAAGCTCG 5730445 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | |||||| ||||| || ||| | || || || || Sbjct 5730446 GACACCATTGACAATGTTAAGGC-GAAAATTCAAGACAAGGAGGGTATTCCCCCGGACCA 5730504 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || ||||| || || ||||| | | ||| | | || || || Sbjct 5730505 GCAGAGACTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCAGGACTCTTGCAGACTATAA 5730564 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 5730565 CATCCAGAAAGAGTCTAC 5730582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337859749359008