Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq49 114 9e-21
seq652 95.1 8e-15
seq116 95.1 8e-15
seq203 86.0 4e-12
>seq49
Length=4798478
Score = 114 bits (126), Expect = 9e-21
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||| || || ||||| || || ||||| |||||| | |||||||| | |
Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | | ||| |||||| ||||| ||||| | || || |||||
Sbjct 2840917 TGACACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2840976
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || |||||||| ||||| || ||||| | | ||||| | ||||||||
Sbjct 2840977 GCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2841036
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || ||||||||||| | || || |||
Sbjct 2841037 CATCCAGAAAGAGTCCACTCTTCACTTGGTT 2841067
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||| || || ||||| || || ||||| |||||| | |||||||| | |
Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | | ||| ||||||| ||||| ||||| | || || |||||
Sbjct 2846905 TGACACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2846964
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| || ||||| || ||||| | | ||||| | ||||||||
Sbjct 2846965 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2847024
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || |||||||| | || || |||
Sbjct 2847025 CATCCAGAAGGAGTCCACTCTTCACTTGGTT 2847055
Score = 109 bits (120), Expect = 4e-19
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || ||||| || || ||||| |||||| | |||||||| | |
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| | || ||| | ||| |||||| || ||||||||||| | || || ||||
Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAA-TTCAGGACAAAGAAGGCATTCCCCCGGATC 2870031
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | | || ||||| || ||||| || ||||| | | ||| | | ||||| |
Sbjct 2870032 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 2870091
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||| || |||||||| || | || || |||
Sbjct 2870092 ACATCCAGAAAGAGTCGACTCTTCACTTGGTT 2870123
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || || || || || || || |||||| | ||||| || | ||
Sbjct 2841086 ATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTTTGGAAGTCGAGAGCTCG 2841145
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || || ||||| ||||| | || ||||| ||
Sbjct 2841146 GACACGATTGATAATGTCAAAGC-GAAGATACAGGACAAGGAAGGCATTCCCCCAGACCA 2841204
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || ||||| || ||||| || || || | || || | | |||||||||
Sbjct 2841205 GCAGCGGTTGATTTTTGCAGGGAAACAGCTCGAGGATGGCCGGACACTGGCCGATTACAA 2841264
Query 23790 CATACAAAAAGAGTCCAC 23807
|| ||||| ||||| ||
Sbjct 2841265 TATTCAAAAGGAGTCGAC 2841282
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || |||||||| || || || || || ||||| ||||| | ||
Sbjct 2845980 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAAAGCTCG 2846039
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | || |||||||| || | || || || ||
Sbjct 2846040 GACACGATTGATAATGTCAAGGCCAAGA-TTCAAGACAAAGAGGGAATCCCTCCTGACCA 2846098
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || || || || | ||||| | | ||||||||
Sbjct 2846099 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGCACCCTGGCTGATTACAA 2846158
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||| || ||||| | ||||| ||
Sbjct 2846159 CATCCAAAAGGAATCCACCCTTCATTTGGT 2846188
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || |||||||| || || || || || ||||| ||||| | ||
Sbjct 2840174 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAAAGCTCG 2840233
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| ||||| ||| | || | || | || ||||| || || | || || || ||
Sbjct 2840234 GACACGGTTGATAATGTCAAGGCCAAGA-TTCAAGACAAGGAGGGAATCCCTCCTGACCA 2840292
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || || || || | ||||| | | ||||||||
Sbjct 2840293 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGCACCCTGGCTGATTACAA 2840352
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| ||||| || || || |||| || |||
Sbjct 2840353 CATCCAAAAGGAATCAACCCTACACTTGGTT 2840383
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || ||||| || || || || ||||| || || || |
Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | |||| | ||||||||||| | || ||||| ||
Sbjct 2869746 GATACCATTGACAATGTGAAGGCCAAAA-TCCAGGACAAAGAAGGGATTCCCCCAGACCA 2869804
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || ||||| || || ||||| || || | || || ||| || |||||
Sbjct 2869805 GCAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACAA 2869864
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| ||||| || ||||| | || || || | | ||| ||||||||
Sbjct 2869865 CATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTTTGAGAGGAGGA 2869913
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||| |||| || || || || || || || || ||||| | |||||||| | ||
Sbjct 2847074 ATGCAGGTTTTTGTGAAGACTCTGACTGGCAAGACTATCACCTTGGAAGTTGAGAGCTCG 2847133
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | ||||| || || | || ||||| ||
Sbjct 2847134 GACACGATTGATAATGTCAAAGCGAAGA-TACAGGACAAGGAGGGCATTCCCCCAGACCA 2847192
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || ||||| || || ||||| | || | || || | | |||||||||
Sbjct 2847193 GCAGCGGTTGATTTTTGCAGGGAAGCAACTCGGGGATGGCCGGACACTGGCCGATTACAA 2847252
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| ||||| ||
Sbjct 2847253 CATTCAAAAGGAGTCGAC 2847270
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || |||||||| || || || || || || || ||||| | ||
Sbjct 2869458 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTTGAGGTTGAAAGCTCG 2869517
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| ||||| ||| | || | || | || ||||| || || | || || || ||
Sbjct 2869518 GACACGGTTGATAATGTCAAGGCCAAGA-TTCAAGACAAGGAGGGAATCCCTCCTGACCA 2869576
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || || || || | ||||| | | ||||||||
Sbjct 2869577 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGCACCCTGGCTGATTACAA 2869636
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || || || || |||| || |||
Sbjct 2869637 CATCCAGAAGGAATCAACCCTACACTTGGTT 2869667
>seq652
Length=2384379
Score = 95.1 bits (104), Expect = 8e-15
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||| || || || || || ||||| || |||||||| || || || |
Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| | || ||| | || |||| | | ||||| || || | || ||||| |
Sbjct 465573 AGACACCATCGACAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCTCCAGACC 465631
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | | || |||||||| || ||||||||||||| | | || | | |||||| |
Sbjct 465632 AGCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTATA 465691
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || |||||||| ||
Sbjct 465692 ACATCCAGAAAGAGTCAAC 465710
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || || || ||| | ||||| || | ||
Sbjct 465286 ATGCAGATATTTGTCAAGACCCTTACCGGGAAGACCATAACTTTGGAAGTCGAGAGCTCG 465345
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || ||||| ||| | ||| | || | | ||||| ||||| | || ||||||||
Sbjct 465346 GATACCGTTGATAATGTCAAAGCTAAGA-TACAGGACAAGGAAGGCATTCCCCCAGATCA 465404
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || ||||| || || || || || || | || || | | ||||||||
Sbjct 465405 GCAGAGGTTGATTTTTGCTGGGAAGCAGCTCGAGGATGGCCGGACACTGGCGGATTACAA 465464
Query 23790 CATACAAAAAGAGTCCACATTACAT 23814
||| ||||| ||||| || |||||
Sbjct 465465 CATCCAAAAGGAGTCAACTCTACAT 465489
>seq116
Length=10441785
Score = 95.1 bits (104), Expect = 8e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || ||||| ||||| ||||| || || | ||
Sbjct 4712070 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAAACCATCACGCTCGAGGTCGAGAGCTCG 4712011
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || || | ||||| |||||
Sbjct 4712010 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAG 4711951
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || ||||| || || || || |||| | || | | ||||||||||
Sbjct 4711950 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCCTCGCCGATTACAAC 4711891
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||||||
Sbjct 4711890 ATCCAGAAGGAGTCCAC 4711874
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| ||||| || || | |
Sbjct 4726517 ATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATCACGCTCGAGGTCGAGAGCTCC 4726576
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || ||||| || || || || | ||||| |||||
Sbjct 4726577 GACACGATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 4726636
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || ||||| || || || || |||| | || | | ||||||||||
Sbjct 4726637 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTCGCCGATTACAAC 4726696
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || |||||||| ||
Sbjct 4726697 ATCCAGAAAGAGTCGAC 4726713
>seq203
Length=8626763
Score = 86.0 bits (94), Expect = 4e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||| || || ||||| ||||||||||| ||||| | || || || | |
Sbjct 5730841 AATGCAGATTTTTGTCAAGACCCTGACGGGAAAAACCATCACCTTGGAGGTCGAGAGCTC 5730900
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| |||| ||| |||| | ||| || ||||| || || | || || || |
Sbjct 5730901 GGACACGATTGATAATGTTAAGGC-AAAGATCCAAGACAAGGAGGGGATCCCACCGGACC 5730959
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
||||| | | || || ||||| || || ||||| || | | || | | || ||||
Sbjct 5730960 AACAGAGACTGATCTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCTGACTACA 5731019
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || || ||||| ||
Sbjct 5731020 ACATTCAGAAGGAGTCTAC 5731038
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || || || || || || ||| | ||||| || | ||
Sbjct 5730386 ATGCAGATTTTCGTGAAGACGCTTACCGGGAAGACCATAACTTTGGAAGTGGAAAGCTCG 5730445
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| |||| | |||||| ||||| || ||| | || || || ||
Sbjct 5730446 GACACCATTGACAATGTTAAGGC-GAAAATTCAAGACAAGGAGGGTATTCCCCCGGACCA 5730504
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || || ||||| || || ||||| | | ||| | | || || ||
Sbjct 5730505 GCAGAGACTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCAGGACTCTTGCAGACTATAA 5730564
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 5730565 CATCCAGAAAGAGTCTAC 5730582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337859749359008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |