Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_030240.1
Length=128058
Score E
Sequences producing significant alignments: (Bits) Value
seq652 86.0 5e-12
seq49 82.4 6e-11
>seq652
Length=2384379
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069
|||| || | ||||| | ||||| ||| | ||| || || || || || || ||||| |
Sbjct 465286 TGCCCCCCCTCAATCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAATCCG 465227
Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129
||| ||| | ||| || | |||||| || ||| | ||||||||||| || ||| ||
Sbjct 465226 CCAAAGTCCTACCATCCTCAAGTTGTTTCCCGGCAAAGATAAGCCTTTGCTGATCTGGGG 465167
Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189
| | |||||| ||||| |||||| ||| |||| | | | || || | | |
Sbjct 465166 GAATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTCAGAGCTCTCAA 465107
Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239
||| | ||| || || || || || | || || | ||| |||||||||
Sbjct 465106 CTTCCAAGGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCATT 465057
>seq49
Length=4798478
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089
|||| ||| | ||| || ||||| || || || ||||| |||| ||| | ||||||
Sbjct 2870122 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCT 2870063
Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149
| ||||| || ||| | |||||||| || || || ||| | |||||||||||| |
Sbjct 2870062 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCTTTGTCCTGA 2870003
Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209
|||||| ||| |||| | | | || || | | | ||| | || || |||||
Sbjct 2870002 ATTTTTGCTTTGACATTGTCGATAGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 2869943
Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCATT 101239
|| || | || || | ||| |||||||||
Sbjct 2869942 CCAGTAAGGGTCTTGACAAAGATTTGCATT 2869913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409479184053384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |