Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq652 86.0 5e-12 seq49 82.4 6e-11 >seq652 Length=2384379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || | ||||| | ||||| ||| | ||| || || || || || || ||||| | Sbjct 465286 TGCCCCCCCTCAATCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAATCCG 465227 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| ||| | ||| || | |||||| || ||| | ||||||||||| || ||| || Sbjct 465226 CCAAAGTCCTACCATCCTCAAGTTGTTTCCCGGCAAAGATAAGCCTTTGCTGATCTGGGG 465167 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | |||||| ||||| |||||| ||| |||| | | | || || | | | Sbjct 465166 GAATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTCAGAGCTCTCAA 465107 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| | ||| || || || || || | || || | ||| ||||||||| Sbjct 465106 CTTCCAAGGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCATT 465057 >seq49 Length=4798478 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | ||| || ||||| || || || ||||| |||| ||| | |||||| Sbjct 2870122 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCT 2870063 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | ||||| || ||| | |||||||| || || || ||| | |||||||||||| | Sbjct 2870062 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCTTTGTCCTGA 2870003 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 |||||| ||| |||| | | | || || | | | ||| | || || ||||| Sbjct 2870002 ATTTTTGCTTTGACATTGTCGATAGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 2869943 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || | || || | ||| ||||||||| Sbjct 2869942 CCAGTAAGGGTCTTGACAAAGATTTGCATT 2869913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409479184053384