Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 1e-15 >seq12 Length=4956709 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | || || || ||||| || |||||| | ||| | | || Sbjct 4012319 GTTCCTGCATTGAACAGGGTGGGGGAAGCATGAGTGAACCATCGCTGAGACATCATATGA 4012378 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || || || || ||||| | ||| |||||||| || || || | |||||| Sbjct 4012379 TATGTTTTGATGGCAGAGTCGATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 4012437 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||||||||| || ||| | | |||| | ||| || | || | Sbjct 4012438 CATGTGCTGAGGTCTTTCCACAACCTTCCCTTGGACCTTCAGAAGGTAAGACCTCTCGAG 4012497 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||||||||| |||| ||| ||| |||| || || || || Sbjct 4012498 TGTTTTAAAACCAAAGTAGTCGTAATCAAAATCTCGGTCATAGATTAT 4012545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694352934096640