Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq12 102 1e-16
>seq12
Length=4956709
Score = 102 bits (112), Expect = 1e-16
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
||||||||||| |||| || || || ||||||||||||||| | ||| | | ||
Sbjct 4012319 GTTCCTGCATTGAACAGGGTGGGGGAAGCATGAGTGAACCATCGCTGAGACATCATATGA 4012378
Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112
||||||| || | | || || || | ||| |||||||| ||||| || | ||||||
Sbjct 4012379 TATGTTTTGATGGCAGAGTCGATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 4012437
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172
||| |||||||||| ||| ||| ||| | | |||| | ||| || | || |
Sbjct 4012438 CATGTGCTGAGGTCTTTCCACAACCTTCCCTTGGACCTTCAGAAGGTAAGACCTCTCGAG 4012497
Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
|||||||||||||| |||| ||| ||| |||| || || || ||
Sbjct 4012498 TGTTTTAAAACCAAAGTAGTCGTAATCAAAATCTCGGTCATAGATTAT 4012545
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551
||||||||||||| | ||| ||| ||||||||| || |||||| ||| |||||||
Sbjct 4011436 CTCTCTTTCATATCGCAAATACAACTTTTCAAATTCTTCACCCCAACAATCTGCCAAACC 4011495
Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610
||| |||||| ||||| | | |||||| | |||| | | || ||||| || |||||
Sbjct 4011496 TGGAGCTTCATTTGGACAAAAAAGTGACCAATTGCCAT-TACTTTGAACCCTTTCCATAA 4011554
Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647
| ||||| || | ||| || || ||| ||||| ||
Sbjct 4011555 ATAGATCTGGCACCCAAAGGCCATAAAACAGATCCCG 4011591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712610228728320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |