Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq12 102 1e-16 >seq12 Length=4956709 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| |||| || || || ||||||||||||||| | ||| | | || Sbjct 4012319 GTTCCTGCATTGAACAGGGTGGGGGAAGCATGAGTGAACCATCGCTGAGACATCATATGA 4012378 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || | | || || || | ||| |||||||| ||||| || | |||||| Sbjct 4012379 TATGTTTTGATGGCAGAGTCGATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 4012437 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||||| ||| ||| ||| | | |||| | ||| || | || | Sbjct 4012438 CATGTGCTGAGGTCTTTCCACAACCTTCCCTTGGACCTTCAGAAGGTAAGACCTCTCGAG 4012497 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||||||||| |||| ||| ||| |||| || || || || Sbjct 4012498 TGTTTTAAAACCAAAGTAGTCGTAATCAAAATCTCGGTCATAGATTAT 4012545 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||| | ||| ||| ||||||||| || |||||| ||| ||||||| Sbjct 4011436 CTCTCTTTCATATCGCAAATACAACTTTTCAAATTCTTCACCCCAACAATCTGCCAAACC 4011495 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| |||||| ||||| | | |||||| | |||| | | || ||||| || ||||| Sbjct 4011496 TGGAGCTTCATTTGGACAAAAAAGTGACCAATTGCCAT-TACTTTGAACCCTTTCCATAA 4011554 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 | ||||| || | ||| || || ||| ||||| || Sbjct 4011555 ATAGATCTGGCACCCAAAGGCCATAAAACAGATCCCG 4011591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712610228728320