Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq49 122 7e-23
seq652 104 2e-17
seq203 93.3 4e-14
>seq49
Length=4798478
Score = 122 bits (134), Expect = 7e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||| |||||||| || | || || ||||| || || ||||| || |
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|| || | | | | || ||| ||||||| |||||||||||| ||||| |||||
Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATCA 2870032
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| |||||||||| ||| || ||||| | |||||| || ||| |||| ||||||||
Sbjct 2870033 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATAA 2870092
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| || ||||| || || || || || || |||||||| | || ||||
Sbjct 2870093 CATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGGCA 2870142
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||||||||| || || | || || ||||| || || ||||| || |
Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|| | | | | | || ||| |||||| ||||| |||||| ||||| |||||
Sbjct 2840917 TGACACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2840976
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| |||||||||| ||| || ||||| | |||||| || ||| |||| ||||| ||
Sbjct 2840977 GCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2841036
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| || ||||| || || || || || || |||| ||| | || ||||
Sbjct 2841037 CATCCAGAAAGAGTCCACTCTTCACTTGGTTCTGCGCCTGAGGGGAGGCA 2841086
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||||||||| || || | || || ||||| || || ||||| || |
Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|| | | | | | || ||| ||||||| ||||| |||||| ||||| |||||
Sbjct 2846905 TGACACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCA 2846964
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| |||||||||| ||| || ||||| | |||||| || ||| |||| ||||| ||
Sbjct 2846965 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACAA 2847024
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTG 111318
|| || || || || || || || || || |||| |||
Sbjct 2847025 CATCCAGAAGGAGTCCACTCTTCACTTGGTTCTGCGCCTG 2847064
>seq652
Length=2384379
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||| |||||||| || | || || || || || ||| ||||| || |
Sbjct 465057 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACCTTGGAAGTTGAGAGCTC 465116
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|| | ||| | | || ||| |||||| ||||| |||||| ||||| |||||
Sbjct 465117 TGACACCATTGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 465176
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
||||||||||| | ||| || |||||| | || ||| || ||| |||| ||||||||
Sbjct 465177 GCAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTATAA 465236
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| || || || || || || || || ||| |||| || | || ||||
Sbjct 465237 CATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGATTGAGGGGGGGCA 465286
>seq203
Length=8626763
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| ||||| ||||| | || ||||| || || ||| | || |||| | |
Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111218
|| | | | | |||||| ||||||| ||||| ||||| | |||| || | ||
Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGG-GATCCCTCCGGACCA 5730048
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| |||||||| | ||| ||||| || | |||||| ||| |||||||||||||
Sbjct 5730049 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAA 5730108
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| || || || ||||| || || || ||| | ||||| | || ||||
Sbjct 5730109 CATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTCAGGGGAGGCA 5730158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421624197386176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |