Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 5e-17
seq1 102 2e-16
seq34 100 6e-16
seq143 98.7 2e-15
seq78 98.7 2e-15
seq44 98.7 2e-15
seq30 96.9 7e-15
seq4 96.9 7e-15
seq256 95.1 3e-14
seq13 95.1 3e-14
seq3 89.7 1e-12
>seq6
Length=5093711
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 1973594 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1973653
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1973654 CCCACGGTGGGC 1973665
Score = 100 bits (110), Expect = 6e-16
Identities = 578/901 (64%), Gaps = 33/901 (4%)
Strand=Plus/Plus
Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810
||||| ||||||||| | ||||| | || ||||| ||||||||||| || ||||
Sbjct 4851654 TCTGCATGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAAAGCCATGGCCT 4851713
Query 229811 CTTTCTGGACCACTGAGGAAGT--TCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAA 229868
| ||||||||| ||||||| || ||||| | | ||| || | | ||| ||
Sbjct 4851714 CGTTCTGGACCGCTGAGGAGGTCGACCTCTCACAG--GACCTCCGCCATTGG---GAAGG 4851768
Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928
|||| | ||||||| ||||||||| ||| | || | || ||||| | ||||||
Sbjct 4851769 CCTCACGGCCGACGAAAAGCATTTCATCTCCCACGTTCTGGCCTTCTTCGCCGCCTCCGA 4851828
Query 229929 TGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGG 229987
|||||| || |||| ||||| || | || || | ||| || |||| | ||||
Sbjct 4851829 TGGTATCGTTCTGGAGAATCTCGCCGGCC-GGTTCATGAAGGAGGTTCAGGTTGCGGAGG 4851887
Query 229988 CACGGCAATTTTATGCTTACCAAA---CATTCAACGAATCTATCCATTCTGAACAATATG 230044
| | || |||| | ||||| || | | ||| || || || || ||
Sbjct 4851888 CTAGAGCGTTCTATGGCTTCCAAATCGCAATTGA-GAA--CATTCACTCCGAGATGTACA 4851944
Query 230045 CTCTGCTTATCGACGCGCTTATTTCCGAC-GAG-CAAGAACGGAACGAGCTTTTTGATGC 230102
| || | |||| | || ||| || | |||| |||| | | || | ||
Sbjct 4851945 GTTTGTTGCTCGAAACCTACATCAAGGACTCAGTCGAGAA--GAACAGGTTGTTCCACGC 4852002
Query 230103 CATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACC 230162
||| || | | || || || || || ||||||| | |||||| | || |
Sbjct 4852003 CATCGAGACTGTACCTTGCGTCGCGAAGAAAGCCGAGTGGGCGCTAAAATGGATCGA--C 4852060
Query 230163 TGGT--AAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220
| | | |||||||| |||||||| | | || | ||||| ||||||||| | ||
Sbjct 4852061 GGCTCCGAGTCGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTTTCTTC 4852120
Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 230280
|| || |||||||||||||| || |||||| ||| ||| | ||||| || |
Sbjct 4852121 TCGGGAAGTTTCTGCGCCATATTCTGGCTGAAGAAACGAGGCCTTATGCCAGGATTGACA 4852180
Query 230281 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-AT 230339
| || ||||| || ||| || ||||| || || || | | || ||| |||| |
Sbjct 4852181 TTCTCAAACGAATTGATCTCCCGAGACGAAGGCCTGCA-CTGCGATTTCGCGTGCTTGCT 4852239
Query 230340 GTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGC 230399
||| || | | ||| | || ||| | || || ||| | | ||
Sbjct 4852240 GTACTCTCTGATGAGGAATCAACTGAGCGACGACAAAGTGAAGGGGATCGTCCGGCAGGC 4852299
Query 230400 AGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGA 230458
|| || | ||| | ||| ||| | || || || | || || ||| || | || ||||
Sbjct 4852300 GGTGGATATCGAGAGGGAATTCGTGTGCGATGCACTGCCGTG-CGCGTTGGTGGGGATGA 4852358
Query 230459 ACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTG 230518
||| || || ||| | |||||||||| ||||| || ||||| | | || || || |
Sbjct 4852359 ACGGCGATCTGATGAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTGGTAGCCCTAG 4852418
Query 230519 GTTACGAGAAAG-TGTACAACTCTA-AGAACCCCTTTGCATTTATGGAGCTCATTTCGCT 230576
| || || ||| | ||||| | || ||||||| || | | ||||| | || |||||
Sbjct 4852419 GGCAC-AGCAAGATTTACAA-TGTACAGAACCCGTTCGATTGGATGGAATTGATATCGCT 4852476
Query 230577 TCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGAT 230636
|| ||||| |||||||||||||| ||| | || | || ||||||| | | ||||||
Sbjct 4852477 GCAGGGGAAAACCAACTTCTTCGAGAAGAGGGTGGGAGAGTATCAGAAGGCGTCTGTGAT 4852536
Query 230637 G 230637
|
Sbjct 4852537 G 4852537
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 4419208 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4419149
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 4419148 CCCACGGTGGGC 4419137
>seq1
Length=7185522
Score = 102 bits (112), Expect = 2e-16
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
|||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||
Sbjct 6394609 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 6394550
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 6394549 GCCCCACGGTGGGC 6394536
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6701953 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6701894
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6701893 CCCACGGTGGGC 6701882
>seq34
Length=1513885
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 1396132 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1396073
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 1396072 CCCCACGGTGGGC 1396060
Score = 96.9 bits (106), Expect = 7e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||
Sbjct 1383656 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 1383597
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 1383596 CCCCACGGTGGGC 1383584
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|| ||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 1401451 GCTCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1401392
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1401391 CCCACGGTGGGC 1401380
Score = 95.1 bits (104), Expect = 3e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCA-GACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||||||||||||| |||||||||| | | || |||| || ||||||||||||||||
Sbjct 1406781 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1406722
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 1406721 GCCCCACGGTGGGC 1406708
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| ||||||||| ||||| |||| || ||||||||||||| |||
Sbjct 1388194 TGCCCGTCTAGCTCAGTTGGTAGAGCGAAAGACTCTTAACCTTGTGGTCGTGGGTTTGAG 1388135
Query 165769 CCCCACGATGGGC 165781
|||||| |||||
Sbjct 1388134 CCCCACAGTGGGC 1388122
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| ||||||||| || || |||| || |||||||||||||||||
Sbjct 1390940 TGCCCGTCTAGCTCAGTTGGTAGAGCGTAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1390881
Query 165769 CCCCACGATGGGC 165781
||||| | |||||
Sbjct 1390880 CCCCATGGTGGGC 1390868
>seq143
Length=575902
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 487902 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 487843
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 487842 CCCACGGTGGGC 487831
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || | || || |||||||||||||||| |
Sbjct 485651 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTAAACCTTGTGGTCGTGGGTTCGAAC 485592
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 485591 CCCACGGTGGGC 485580
>seq78
Length=1002665
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 910960 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 911019
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 911020 CCCACGGTGGGC 911031
>seq44
Length=1278902
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 201558 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 201617
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 201618 CCCACGGTGGGC 201629
>seq30
Length=1592719
Score = 96.9 bits (106), Expect = 7e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||
Sbjct 885406 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 885465
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 885466 CCCCACGGTGGGC 885478
>seq4
Length=5448771
Score = 96.9 bits (106), Expect = 7e-15
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||| |
Sbjct 593243 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGARC 593184
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 593183 CCCACGGTGGGC 593172
>seq256
Length=251342
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||| |
Sbjct 115886 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 115827
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 115826 CCCACGGTGGGC 115815
>seq13
Length=3104439
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||| |
Sbjct 849430 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 849489
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 849490 CCCACGGTGGGC 849501
>seq3
Length=6378990
Score = 89.7 bits (98), Expect = 1e-12
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 165713 CGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772
||||||||||||| |||||||||| ||||| |||| || |||||||||||||| | ||||
Sbjct 4760675 CGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAACCTTGTGGTCGTGGGTTCAAACCCC 4760734
Query 165773 ACGATGGGC 165781
||| |||||
Sbjct 4760735 ACGGTGGGC 4760743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057809741854760
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