Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 104 5e-17 seq1 102 2e-16 seq34 100 6e-16 seq143 98.7 2e-15 seq78 98.7 2e-15 seq44 98.7 2e-15 seq30 96.9 7e-15 seq4 96.9 7e-15 seq256 95.1 3e-14 seq13 95.1 3e-14 seq3 89.7 1e-12 >seq6 Length=5093711 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1973594 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1973653 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1973654 CCCACGGTGGGC 1973665 Score = 100 bits (110), Expect = 6e-16 Identities = 578/901 (64%), Gaps = 33/901 (4%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||||||||| | ||||| | || ||||| ||||||||||| || |||| Sbjct 4851654 TCTGCATGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAAAGCCATGGCCT 4851713 Query 229811 CTTTCTGGACCACTGAGGAAGT--TCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAA 229868 | ||||||||| ||||||| || ||||| | | ||| || | | ||| || Sbjct 4851714 CGTTCTGGACCGCTGAGGAGGTCGACCTCTCACAG--GACCTCCGCCATTGG---GAAGG 4851768 Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928 |||| | ||||||| ||||||||| ||| | || | || ||||| | |||||| Sbjct 4851769 CCTCACGGCCGACGAAAAGCATTTCATCTCCCACGTTCTGGCCTTCTTCGCCGCCTCCGA 4851828 Query 229929 TGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGG 229987 |||||| || |||| ||||| || | || || | ||| || |||| | |||| Sbjct 4851829 TGGTATCGTTCTGGAGAATCTCGCCGGCC-GGTTCATGAAGGAGGTTCAGGTTGCGGAGG 4851887 Query 229988 CACGGCAATTTTATGCTTACCAAA---CATTCAACGAATCTATCCATTCTGAACAATATG 230044 | | || |||| | ||||| || | | ||| || || || || || Sbjct 4851888 CTAGAGCGTTCTATGGCTTCCAAATCGCAATTGA-GAA--CATTCACTCCGAGATGTACA 4851944 Query 230045 CTCTGCTTATCGACGCGCTTATTTCCGAC-GAG-CAAGAACGGAACGAGCTTTTTGATGC 230102 | || | |||| | || ||| || | |||| |||| | | || | || Sbjct 4851945 GTTTGTTGCTCGAAACCTACATCAAGGACTCAGTCGAGAA--GAACAGGTTGTTCCACGC 4852002 Query 230103 CATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACC 230162 ||| || | | || || || || || ||||||| | |||||| | || | Sbjct 4852003 CATCGAGACTGTACCTTGCGTCGCGAAGAAAGCCGAGTGGGCGCTAAAATGGATCGA--C 4852060 Query 230163 TGGT--AAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220 | | | |||||||| |||||||| | | || | ||||| ||||||||| | || Sbjct 4852061 GGCTCCGAGTCGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTTTCTTC 4852120 Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 230280 || || |||||||||||||| || |||||| ||| ||| | ||||| || | Sbjct 4852121 TCGGGAAGTTTCTGCGCCATATTCTGGCTGAAGAAACGAGGCCTTATGCCAGGATTGACA 4852180 Query 230281 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-AT 230339 | || ||||| || ||| || ||||| || || || | | || ||| |||| | Sbjct 4852181 TTCTCAAACGAATTGATCTCCCGAGACGAAGGCCTGCA-CTGCGATTTCGCGTGCTTGCT 4852239 Query 230340 GTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGC 230399 ||| || | | ||| | || ||| | || || ||| | | || Sbjct 4852240 GTACTCTCTGATGAGGAATCAACTGAGCGACGACAAAGTGAAGGGGATCGTCCGGCAGGC 4852299 Query 230400 AGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGA 230458 || || | ||| | ||| ||| | || || || | || || ||| || | || |||| Sbjct 4852300 GGTGGATATCGAGAGGGAATTCGTGTGCGATGCACTGCCGTG-CGCGTTGGTGGGGATGA 4852358 Query 230459 ACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTG 230518 ||| || || ||| | |||||||||| ||||| || ||||| | | || || || | Sbjct 4852359 ACGGCGATCTGATGAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTGGTAGCCCTAG 4852418 Query 230519 GTTACGAGAAAG-TGTACAACTCTA-AGAACCCCTTTGCATTTATGGAGCTCATTTCGCT 230576 | || || ||| | ||||| | || ||||||| || | | ||||| | || ||||| Sbjct 4852419 GGCAC-AGCAAGATTTACAA-TGTACAGAACCCGTTCGATTGGATGGAATTGATATCGCT 4852476 Query 230577 TCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGAT 230636 || ||||| |||||||||||||| ||| | || | || ||||||| | | |||||| Sbjct 4852477 GCAGGGGAAAACCAACTTCTTCGAGAAGAGGGTGGGAGAGTATCAGAAGGCGTCTGTGAT 4852536 Query 230637 G 230637 | Sbjct 4852537 G 4852537 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4419208 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4419149 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4419148 CCCACGGTGGGC 4419137 >seq1 Length=7185522 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 6394609 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 6394550 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 6394549 GCCCCACGGTGGGC 6394536 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6701953 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6701894 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6701893 CCCACGGTGGGC 6701882 >seq34 Length=1513885 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1396132 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1396073 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1396072 CCCCACGGTGGGC 1396060 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 1383656 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 1383597 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1383596 CCCCACGGTGGGC 1383584 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 || ||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1401451 GCTCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1401392 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1401391 CCCACGGTGGGC 1401380 Score = 95.1 bits (104), Expect = 3e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCA-GACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||| |||||||||| | | || |||| || |||||||||||||||| Sbjct 1406781 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1406722 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 1406721 GCCCCACGGTGGGC 1406708 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| ||||||||| ||||| |||| || ||||||||||||| ||| Sbjct 1388194 TGCCCGTCTAGCTCAGTTGGTAGAGCGAAAGACTCTTAACCTTGTGGTCGTGGGTTTGAG 1388135 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 1388134 CCCCACAGTGGGC 1388122 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| ||||||||| || || |||| || ||||||||||||||||| Sbjct 1390940 TGCCCGTCTAGCTCAGTTGGTAGAGCGTAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1390881 Query 165769 CCCCACGATGGGC 165781 ||||| | ||||| Sbjct 1390880 CCCCATGGTGGGC 1390868 >seq143 Length=575902 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 487902 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 487843 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 487842 CCCACGGTGGGC 487831 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || | || || |||||||||||||||| | Sbjct 485651 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTAAACCTTGTGGTCGTGGGTTCGAAC 485592 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 485591 CCCACGGTGGGC 485580 >seq78 Length=1002665 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 910960 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 911019 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 911020 CCCACGGTGGGC 911031 >seq44 Length=1278902 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 201558 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 201617 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 201618 CCCACGGTGGGC 201629 >seq30 Length=1592719 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 885406 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 885465 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 885466 CCCCACGGTGGGC 885478 >seq4 Length=5448771 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 593243 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGARC 593184 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 593183 CCCACGGTGGGC 593172 >seq256 Length=251342 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 115886 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 115827 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 115826 CCCACGGTGGGC 115815 >seq13 Length=3104439 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 849430 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 849489 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 849490 CCCACGGTGGGC 849501 >seq3 Length=6378990 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 165713 CGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||| |||||||||| ||||| |||| || |||||||||||||| | |||| Sbjct 4760675 CGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAACCTTGTGGTCGTGGGTTCAAACCCC 4760734 Query 165773 ACGATGGGC 165781 ||| ||||| Sbjct 4760735 ACGGTGGGC 4760743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057809741854760