Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6 136 4e-27 >seq6 Length=5093711 Score = 136 bits (150), Expect = 4e-27 Identities = 311/466 (67%), Gaps = 3/466 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||||||||| || | || ||||||| | ||| | |||||| || | Sbjct 4852241 ACAGCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGA 4852182 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 ||||||| || ||||| ||||||||||| | ||| ||||| ||| ||| || | Sbjct 4852181 ATGTCAATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGGCGCAGAAACTTCCCG 4852122 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| ||||| || || |||| || | || | || || || ||| | || Sbjct 4852121 AGAAGAAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAGC 4852062 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || |||||||| || ||||||||||||| | | | |||| | || || | Sbjct 4852061 CGT--CG-ATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGA 4852005 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 |||| | || || | | || || | ||| | || || || |||| | | | Sbjct 4852004 TGGCGTGGAACAACCTGTTCTTCTCGACTGAGTCCTTGATGTAGGTTTCGAGCAACAAAC 4851945 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||| |||||||| || || || || || || || || || || | Sbjct 4851944 TGTACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAGCCT 4851885 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 |||| | ||||| ||| ||| || | || ||||| || ||||| || ||| Sbjct 4851884 CCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCATCGG 4851825 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 |||||||| || |||| | || ||||||| |||||||| Sbjct 4851824 AGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTC 4851779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517538794275360