Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 >seq6 Length=5093711 Score = 138 bits (152), Expect = 1e-27 Identities = 313/464 (67%), Gaps = 15/464 (3%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 |||||||| ||||| || || |||||||||| | ||| | |||||| || || || || Sbjct 4852233 CACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAAT 4852174 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAAGA 16319 |||||||| ||||||||||| | ||||||||| ||||| || | ||||| |||| Sbjct 4852173 CCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGGCGCAGAAACT--TCCCGAGAAGA 4852116 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTATT 16377 | ||||| || ||| |||| || | || | || || || ||| | | | | | Sbjct 4852115 AAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAGCCGT--- 4852059 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 || |||||||| | |||| |||||||| | | ||| | || || ||||| Sbjct 4852058 -CG-ATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGC 4852001 Query 16438 CTTAAACAATTTCTCTTTTTC--CTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 | ||||| | | || || |||| || | || || || || | || |||||| Sbjct 4852000 GTGGAACAACCTGTTCTTCTCGACTGA--GTCCTTGATGTAGGTTTCGAGCAACAAACTG 4851943 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 ||||| || ||||| |||||||| || || || || || |||||||| || ||||||| Sbjct 4851942 TACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAGCCTCC 4851883 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 || | || || ||| || || | || || ||||| |||||||| || Sbjct 4851882 GCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCATCGGAG 4851823 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC 16659 || || || || |||| | ||| ||||||| |||||||| Sbjct 4851822 GCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTC 4851779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511407674900640