Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq6 159 4e-34
seq52 105 8e-18
seq5 102 1e-16
>seq6
Length=5093711
Score = 159 bits (176), Expect = 4e-34
Identities = 400/600 (67%), Gaps = 12/600 (2%)
Strand=Plus/Minus
Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186
||| ||| || |||||||||||||| || || ||||||| || |||||||| || |
Sbjct 4852241 ACAGCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGA 4852182
Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245
| || | ||| ||||| ||||| || || || ||||| ||||||| |||| || |||
Sbjct 4852181 ATGTCAATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGG-CGCAGAAACTTCCC 4852123
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--AC-CGGCG 24302
|| |||||||| ||||| || || ||| |||| || | ||| || | || ||| |
Sbjct 4852122 GAGAAGAAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAG 4852063
Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362
| ||| ||||| ||| | ||||| ||||| ||||| || ||||| | |||||
Sbjct 4852062 CCGTC---GATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCG 4852006
Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAA 24420
|| || | || | ||| || || ||| || || | || || || | ||| |
Sbjct 4852005 ATGGCGTGGAACAACCTGTTCTTCTC--GACTGAGTCCTTGATGTAGGTTTCGAGCAACA 4851948
Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480
||| ||||| || || |||||||| ||||| || ||||| || || ||||| |||||
Sbjct 4851947 AACTGTACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAG 4851888
Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540
|||| | || ||| || || | || || | || | ||| || || || || |
Sbjct 4851887 CCTCCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCAT 4851828
Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 24600
| ||| || || || |||| || || || |||| |||||||| | || ||
Sbjct 4851827 CGGAGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTGAGGC 4851768
Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660
| ||||| || || | || | || || || || | ||||| || || |||
Sbjct 4851767 CTTCCCAATGGCGGAGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAGGCCA 4851708
Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720
|| || || ||||| | ||| || | | |||| | |||||| || || |||||||
Sbjct 4851707 TGGCTTTCTTGTACATTTCCCATATCTGAGGATACTCAATTGGGAACATGCAGAATCTAT 4851648
>seq52
Length=1204374
Score = 105 bits (116), Expect = 8e-18
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484
||||| | || || | ||| ||||| || || |||||||| || ||| | ||| ||
Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 503409
Query 54485 -TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542
|| || | |||||| || || ||||| | ||| ||||| || || || || | ||| |
Sbjct 503410 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATAA 503468
Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602
|||||||||||| || || |||| ||| | | |||| | ||| || ||||||
Sbjct 503469 GCATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCA 503528
Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
|||||| ||||||||||||| ||| |||||| || || || |||||
Sbjct 503529 GAGTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577
>seq5
Length=5307744
Score = 102 bits (112), Expect = 1e-16
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484
||||| | || || | ||| ||||| || || |||||||| || ||| | ||| ||
Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 4279774
Query 54485 -TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542
|| || | |||||| || || ||||| | ||| ||||| || || || || | |||||
Sbjct 4279775 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTA 4279833
Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602
|||||| |||||||| || || | ||| | | |||| | ||| || ||||||
Sbjct 4279834 GCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCA 4279893
Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
|||||| ||||||||||||| || ||||||||| || || || ||
Sbjct 4279894 GAGTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593713792560960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |