Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq6 275 6e-69
seq4 131 2e-25
seq124 120 3e-22
seq14 113 5e-20
seq21 98.7 1e-15
seq15 89.7 5e-13
>seq6
Length=5093711
Score = 275 bits (304), Expect = 6e-69
Identities = 518/757 (68%), Gaps = 11/757 (1%)
Strand=Plus/Plus
Query 116612 ATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTC 116671
|| ||||| || | || || | || ||| |||||||| || ||| ||| ||||||
Sbjct 4851659 ATGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAAAGCCATGGCCTCGTTC 4851718
Query 116672 TGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGAC 116731
||||||| |||||||| ||||| || ||||| || | ||||| || | | | |
Sbjct 4851719 TGGACCGCTGAGGAGGTCGACCTCTCACAGGACCTCCGCCATTGGGAAGGCCTCACGGCC 4851778
Query 116732 AACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTC 116791
|||| ||||||||| ||||| |||||||| ||||||||| ||| || |||||
Sbjct 4851779 GACGAAAAGCATTTCATCTCCCACGTTCTGGCCTTCTTCGCCGCCTCCGATGGTATCGTT 4851838
Query 116792 AACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTC 116851
|||||||| | || || ||| ||||||| ||||| || ||||| | |||
Sbjct 4851839 CTGGAGAATCTCGCCGGCCGGTTCATGAAGGAGGTTCAGGTTGCGGAGGCTAGAGCGTTC 4851898
Query 116852 TACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA---TTCGACCCTCATC 116908
|| ||||| || ||||| || |||||| | ||||| || ||||| || | |||
Sbjct 4851899 TATGGCTTCCAAATCGCAATTGAGAACATTCACTCCGAGATGTACAGTTTGTTGCTC--- 4851955
Query 116909 GACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATG 116968
|| || ||| | || | |||||| | | ||||| ||||||||||||| |
Sbjct 4851956 GAAACCTACATCAAGGACTCAGTCGAGAAGAACAGGTTGTTCCACGCCATCGAGACTGTA 4852015
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028
|| |||||| |||| |||||||||||||| ||||||| |||| ||| |
Sbjct 4852016 CCTTGCGTCGCGAAGAAAGCCGAGTGGGCGCTAAAATGGATCGACGGCTCCGAG---TCG 4852072
Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088
|| | ||||| ||| | | |||||| || || || | ||||| ||||| ||||||
Sbjct 4852073 TTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTTTCTTCTCGGGAAGTTTC 4852132
Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148
||||||||| ||||| |||||||| ||||| ||||| || |||| ||| |||||
Sbjct 4852133 TGCGCCATATTCTGGCTGAAGAAACGAGGCCTTATGCCAGGATTGACATTCTCAAACGAA 4852192
Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| |||||| | ||||| || ||||| ||||| || || || ||||||| | | ||
Sbjct 4852193 TTGATCTCCCGAGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGCTGTACTCTCTGATG 4852252
Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268
| | | || ||||| | || | || ||||||| | ||||| | ||||||
Sbjct 4852253 AGGAATCAACTGAGCGACGACAAAGTGAAGGGGATCGTCCGGCAGGCGGTGGATATCGAG 4852312
Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327
| ||| | ||| || |||||| | |||| || |||| | || |||| |||
Sbjct 4852313 AGGGAATTCGTGTGCGATGCACTGCCGTGCGCGT-TGGTGGGGATGAACGGCGATCTGAT 4852371
Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364
| | |||||||||||||| || ||| || |||||
Sbjct 4852372 GAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTG 4852408
>seq4
Length=5448771
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || |||||| | ||||| || ||||| || |||| || || |
Sbjct 199776 AATATGCAGATCTTTGTGAAAACGTTGACGGGGAAGACCATAACTCTCGAGGTTGAGAGC 199717
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||| | | | | | | |||| ||| |||| ||||| ||||| || || |||||
Sbjct 199716 TCCGATACCATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCGGAC 199657
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || ||||||| || || || ||||| || |||| || ||||| ||| |||
Sbjct 199656 CAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGAACCCTAGCCGATTAC 199597
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901
||||||||||||||| ||||||| || || |||||
Sbjct 199596 AACATCCAGAAGGAGTCCACGCTCCACCTCGTGTT 199562
Score = 109 bits (120), Expect = 6e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| |||||||| || || || ||||| || |||| ||||| |
Sbjct 205448 ATGCAGATCTTCGTGAAAACGCTGACAGGGAAGACCATAACTCTCGAGGTCGAGAGTTCT 205389
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || |||| ||||| ||||| || || ||||||||
Sbjct 205388 GATACCATCGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATACCGCCGGACCAG 205329
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||| | || || || |||||||| || | || || || ||||||||||
Sbjct 205328 CAGCGTCTCATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAAC 205269
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||| ||| |||| || || || |||
Sbjct 205268 ATCCAGAAAGAGTCCACCCTACACCTTGTG 205239
>seq124
Length=632428
Score = 120 bits (132), Expect = 3e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| ||||| |||||||||||||| || || ||||| | || || ||| | |
Sbjct 447466 AATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTC 447407
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||||| | | | |||| | || |||| ||||| || || ||||| | |||||
Sbjct 447406 CGACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCA 447347
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||| | || || | ||| ||||| ||||| || || | || || || ||| |||||
Sbjct 447346 GCAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGCCGATTACAA 447287
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||| || |||||| | || || |||||||||
Sbjct 447286 CATTCAAAAGGAGTCAACTCTTCATCTAGTG 447256
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| ||||| || |||||||||||| | || || ||| | |
Sbjct 447693 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTCT 447634
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | || |||||||| || || ||||||||
Sbjct 447633 GATACCATCGACAATGTGAAGGCCAAGATCCAAGATAAAGAGGGTATTCCACCGGACCAG 447574
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || || | |||||| ||||| || || || | ||||| || ||||||||
Sbjct 447573 CAGAGGCTGATTTTCGCGGGTAAACAACTCGAAGATGGCCGCACTCTGGCTGACTACAAT 447514
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|| |||||||| | || ||||| | |||
Sbjct 447513 ATTCAGAAGGAATCAACATTGCATTTGGTG 447484
>seq14
Length=2855554
Score = 113 bits (124), Expect = 5e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| ||||| |||||||| |||||| |||| || ||| |
Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| ||| || | || |||||||| || || | ||||||
Sbjct 998492 GATACCATTGACAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCAG 998551
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||| | || |||| ||| || || || || || || | || ||||| ||| |||||
Sbjct 998552 CAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAAT 998611
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||||| | || || ||||| |||
Sbjct 998612 ATCCAGAAGGAATCTACTCTTCATCTGGTG 998641
>seq21
Length=2013095
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||| | || || |||||||| ||| | || || || |
Sbjct 1809456 ATGCAGATTTTCGTCAAGACGTTGACCGGGAAAACCATTACCCTGGAGGTTGAGAGTTCG 1809515
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | ||||||||||| ||||| | ||||||
Sbjct 1809516 GACACCATAGACAATGTAAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAG 1809575
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| ||| || || |||||||| |||| | || || |||||| |||
Sbjct 1809576 CAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTAGGACTCTGGCCGACTATAAC 1809635
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| | || |||| | ||| | || | ||||| ||
Sbjct 1809636 ATCCAGAAGGAGTCTACCTTGCACTTGGTGCTTCGTCTCAGGGGAGG 1809682
Score = 93.3 bits (102), Expect = 4e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 40786 AAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC 40845
|| |||||||||||| ||||||| ||| |||| |||| || || || || ||||| |||
Sbjct 1809324 AAGGAGGGCATCCCCCCGGACCAACAAAGACTAATCTTTGCCGGGAAGCAACTGGAGGAC 1809383
Query 40846 GAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
| |||||||| || || ||||| ||||||||| | || ||||| || || |||||
Sbjct 1809384 GGTCGCACCCTTGCTGATTATAACATTCAGAAGGAGTCGACCCTGCACCTTGTCTTGCG 1809442
>seq15
Length=2492501
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| || || || || || || ||||||||| | || || || | |
Sbjct 255839 AATGCAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACCTTGGAGGTGGAGAGCTC 255780
Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|| | | || |||| | |||| || |||| ||||| ||||| || || | ||||
Sbjct 255779 AGATACGATTGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCTCCAGACC 255721
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| | | |||| || || || |||||||| || | | | || || || ||||
Sbjct 255720 AGCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGGAGGACTCTGGCTGATTACA 255661
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||||| |||| || || || ||
Sbjct 255660 ACATCCAGAAGGAGTCCACTCTTCACCTTGT 255630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515212424867520
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