Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 275 6e-69 seq4 131 2e-25 seq124 120 3e-22 seq14 113 5e-20 seq21 98.7 1e-15 seq15 89.7 5e-13 >seq6 Length=5093711 Score = 275 bits (304), Expect = 6e-69 Identities = 518/757 (68%), Gaps = 11/757 (1%) Strand=Plus/Plus Query 116612 ATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTC 116671 || ||||| || | || || | || ||| |||||||| || ||| ||| |||||| Sbjct 4851659 ATGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAAAGCCATGGCCTCGTTC 4851718 Query 116672 TGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGAC 116731 ||||||| |||||||| ||||| || ||||| || | ||||| || | | | | Sbjct 4851719 TGGACCGCTGAGGAGGTCGACCTCTCACAGGACCTCCGCCATTGGGAAGGCCTCACGGCC 4851778 Query 116732 AACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTC 116791 |||| ||||||||| ||||| |||||||| ||||||||| ||| || ||||| Sbjct 4851779 GACGAAAAGCATTTCATCTCCCACGTTCTGGCCTTCTTCGCCGCCTCCGATGGTATCGTT 4851838 Query 116792 AACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTC 116851 |||||||| | || || ||| ||||||| ||||| || ||||| | ||| Sbjct 4851839 CTGGAGAATCTCGCCGGCCGGTTCATGAAGGAGGTTCAGGTTGCGGAGGCTAGAGCGTTC 4851898 Query 116852 TACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA---TTCGACCCTCATC 116908 || ||||| || ||||| || |||||| | ||||| || ||||| || | ||| Sbjct 4851899 TATGGCTTCCAAATCGCAATTGAGAACATTCACTCCGAGATGTACAGTTTGTTGCTC--- 4851955 Query 116909 GACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATG 116968 || || ||| | || | |||||| | | ||||| ||||||||||||| | Sbjct 4851956 GAAACCTACATCAAGGACTCAGTCGAGAAGAACAGGTTGTTCCACGCCATCGAGACTGTA 4852015 Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || |||||| |||| |||||||||||||| ||||||| |||| ||| | Sbjct 4852016 CCTTGCGTCGCGAAGAAAGCCGAGTGGGCGCTAAAATGGATCGACGGCTCCGAG---TCG 4852072 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | ||||| ||| | | |||||| || || || | ||||| ||||| |||||| Sbjct 4852073 TTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTTTCTTCTCGGGAAGTTTC 4852132 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||||||||| ||||| |||||||| ||||| ||||| || |||| ||| ||||| Sbjct 4852133 TGCGCCATATTCTGGCTGAAGAAACGAGGCCTTATGCCAGGATTGACATTCTCAAACGAA 4852192 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | |||||| | ||||| || ||||| ||||| || || || ||||||| | | || Sbjct 4852193 TTGATCTCCCGAGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGCTGTACTCTCTGATG 4852252 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 | | | || ||||| | || | || ||||||| | ||||| | |||||| Sbjct 4852253 AGGAATCAACTGAGCGACGACAAAGTGAAGGGGATCGTCCGGCAGGCGGTGGATATCGAG 4852312 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327 | ||| | ||| || |||||| | |||| || |||| | || |||| ||| Sbjct 4852313 AGGGAATTCGTGTGCGATGCACTGCCGTGCGCGT-TGGTGGGGATGAACGGCGATCTGAT 4852371 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 | | |||||||||||||| || ||| || ||||| Sbjct 4852372 GAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTG 4852408 >seq4 Length=5448771 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || |||||| | ||||| || ||||| || |||| || || | Sbjct 199776 AATATGCAGATCTTTGTGAAAACGTTGACGGGGAAGACCATAACTCTCGAGGTTGAGAGC 199717 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | | | | | |||| ||| |||| ||||| ||||| || || ||||| Sbjct 199716 TCCGATACCATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCGGAC 199657 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| || || || ||||| || |||| || ||||| ||| ||| Sbjct 199656 CAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGAACCCTAGCCGATTAC 199597 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 ||||||||||||||| ||||||| || || ||||| Sbjct 199596 AACATCCAGAAGGAGTCCACGCTCCACCTCGTGTT 199562 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| |||||||| || || || ||||| || |||| ||||| | Sbjct 205448 ATGCAGATCTTCGTGAAAACGCTGACAGGGAAGACCATAACTCTCGAGGTCGAGAGTTCT 205389 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| ||||| ||||| || || |||||||| Sbjct 205388 GATACCATCGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATACCGCCGGACCAG 205329 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | || || || |||||||| || | || || || |||||||||| Sbjct 205328 CAGCGTCTCATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAAC 205269 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||| ||| |||| || || || ||| Sbjct 205268 ATCCAGAAAGAGTCCACCCTACACCTTGTG 205239 >seq124 Length=632428 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| |||||||||||||| || || ||||| | || || ||| | | Sbjct 447466 AATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTC 447407 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | |||| | || |||| ||||| || || ||||| | ||||| Sbjct 447406 CGACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCA 447347 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | || || | ||| ||||| ||||| || || | || || || ||| ||||| Sbjct 447346 GCAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGCCGATTACAA 447287 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| || |||||| | || || ||||||||| Sbjct 447286 CATTCAAAAGGAGTCAACTCTTCATCTAGTG 447256 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || |||||||||||| | || || ||| | | Sbjct 447693 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTCT 447634 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | || |||||||| || || |||||||| Sbjct 447633 GATACCATCGACAATGTGAAGGCCAAGATCCAAGATAAAGAGGGTATTCCACCGGACCAG 447574 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | |||||| ||||| || || || | ||||| || |||||||| Sbjct 447573 CAGAGGCTGATTTTCGCGGGTAAACAACTCGAAGATGGCCGCACTCTGGCTGACTACAAT 447514 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||||||| | || ||||| | ||| Sbjct 447513 ATTCAGAAGGAATCAACATTGCATTTGGTG 447484 >seq14 Length=2855554 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| |||||||| |||||| |||| || ||| | Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| ||| || | || |||||||| || || | |||||| Sbjct 998492 GATACCATTGACAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCAG 998551 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| ||| || || || || || || | || ||||| ||| ||||| Sbjct 998552 CAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAAT 998611 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| | || || ||||| ||| Sbjct 998612 ATCCAGAAGGAATCTACTCTTCATCTGGTG 998641 >seq21 Length=2013095 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || |||||||| ||| | || || || | Sbjct 1809456 ATGCAGATTTTCGTCAAGACGTTGACCGGGAAAACCATTACCCTGGAGGTTGAGAGTTCG 1809515 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||||||||| ||||| | |||||| Sbjct 1809516 GACACCATAGACAATGTAAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAG 1809575 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| || || |||||||| |||| | || || |||||| ||| Sbjct 1809576 CAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTAGGACTCTGGCCGACTATAAC 1809635 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || |||| | ||| | || | ||||| || Sbjct 1809636 ATCCAGAAGGAGTCTACCTTGCACTTGGTGCTTCGTCTCAGGGGAGG 1809682 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 40786 AAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC 40845 || |||||||||||| ||||||| ||| |||| |||| || || || || ||||| ||| Sbjct 1809324 AAGGAGGGCATCCCCCCGGACCAACAAAGACTAATCTTTGCCGGGAAGCAACTGGAGGAC 1809383 Query 40846 GAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | |||||||| || || ||||| ||||||||| | || ||||| || || ||||| Sbjct 1809384 GGTCGCACCCTTGCTGATTATAACATTCAGAAGGAGTCGACCCTGCACCTTGTCTTGCG 1809442 >seq15 Length=2492501 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || ||||||||| | || || || | | Sbjct 255839 AATGCAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACCTTGGAGGTGGAGAGCTC 255780 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | || |||| | |||| || |||| ||||| ||||| || || | |||| Sbjct 255779 AGATACGATTGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCTCCAGACC 255721 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | | |||| || || || |||||||| || | | | || || || |||| Sbjct 255720 AGCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGGAGGACTCTGGCTGATTACA 255661 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || || || || Sbjct 255660 ACATCCAGAAGGAGTCCACTCTTCACCTTGT 255630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212424867520