Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq14 136 6e-27
seq124 120 5e-22
seq60 102 1e-16
>seq14
Length=2855554
Score = 136 bits (150), Expect = 6e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | ||||| || || |||||||| || || | ||| | ||| |
Sbjct 998660 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACGCTTGAGGTGGAAAGTTCT 998719
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| | || ||||| |||||||| || ||||| || |||||||||
Sbjct 998720 GATACGATTGACAATGTGAAGGCTAAAATCCAAGATAAGGAGGGTATCCCTCCTGATCAA 998779
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||||| |||||||| || || || | ||||| | || || | | || || |||
Sbjct 998780 CAGAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACTCTTGCTGACTACAAT 998839
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || |||||||| |||||||||||||| | || | || || |||||
Sbjct 998840 ATCCAGAAAGAATCTACTTTGCATTTGGTGCTTCGGCTTCGTGGGGGTAT 998889
Score = 107 bits (118), Expect = 3e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || || || || |||||||| || || | ||| | |||
Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| |||| || || ||||||||||| || || || || || ||
Sbjct 998492 GATACCATTGACAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCAG 998551
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||||||||| || || || || ||| | |||||| ||||||| | | ||||| |||
Sbjct 998552 CAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAAT 998611
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747
|| || || ||||| ||| | ||| ||||
Sbjct 998612 ATCCAGAAGGAATCTACTCTTCATCTGGT 998640
>seq124
Length=632428
Score = 120 bits (132), Expect = 5e-22
Identities = 172/242 (71%), Gaps = 3/242 (1%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | ||||| |||| || ||||| || ||| | ||| ||||
Sbjct 447238 AATGCAGATTTTTGTGAAGACCTTAACGGGAAAAACAATCACTCTGGAGGTTGAGAGTTC 447179
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| || || | || ||||||||||||||||| || || ||||| || ||
Sbjct 447178 GGATACCATCGACAACGTGAAGGCTAAAATTCAAGATAAAGAGGGCATCCCACCAGACCA 447119
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||||| ||||| || ||||| ||| | || || | | || || | || |||||
Sbjct 447118 GCAGAGGCTGATTTTCGCTGGAAAGCAACTGGAAGACGGCAGGACTTTGGCCGACTATAA 447059
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGG---TTTTACGTTTACGAGGTGGTATTAAAAA 124774
|||||||||||| || |||| |||||||| | | ||| | || |||||| || ||||
Sbjct 447058 TATTCAAAAAGAGTCGACTTCGCATTTGGTACTGCTGCGTCTTCGTGGTGGTCTTCAAAA 446999
Query 124775 TT 124776
||
Sbjct 446998 TT 446997
Score = 109 bits (120), Expect = 8e-19
Identities = 167/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || || || || || ||||| || || | ||| | ||| |
Sbjct 447693 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTCT 447634
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || ||| | || || || ||||||||||| ||||| ||||| || ||
Sbjct 447633 GATACCATCGACAATGTGAAGGCCAAGATCCAAGATAAAGAGGGTATTCCACCGGACCAG 447574
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||||| ||||| || || |||||| | || ||| | || || | | || || |||
Sbjct 447573 CAGAGGCTGATTTTCGCGGGTAAACAACTCGAAGATGGCCGCACTCTGGCTGACTACAAT 447514
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
||||| || |||||||| ||||||||||| | ||| | || || || || ||| ||
Sbjct 447513 ATTCAGAAGGAATCAACATTGCATTTGGTGCTTCGTCTTCGTGGGGGAATGCAAATTT 447456
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTG--AAGCAA 124596
|||||||| || | || || || || || ||||| || || | ||| || ||||
Sbjct 354260 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTC 354319
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
|||||| || ||| | || || || ||||| ||||| || || ||||| || |
Sbjct 354320 -TGATACCATCGACAATGTGAARGCCAAGAT-CAAGAAAAAGAGGGCATCCCACCAGACC 354377
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || ||| | ||||| || ||||| ||| | || | | | || || | || ||||
Sbjct 354378 AGCAGAGGTTGATTTTCGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTATA 354437
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
| ||||||||||| || |||||||||||||| | ||| | || ||||||
Sbjct 354438 ACATTCAAAAAGAGTCGACTTTGCATTTGGTACTGCGTCTTCGTGGTGGT 354487
>seq60
Length=1131370
Score = 102 bits (112), Expect = 1e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691
|| ||||||||||| |||||||| || |||||| | |||||||| || || ||||| ||
Sbjct 437252 GACAAAGAAGGTATCCCACCTGACCAGCAAAGGTTAATTTTTGCTGGTAAGCAATTGGAT 437193
Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735
||| |||||||| | | ||||||||| || ||||| || |||||
Sbjct 437192 GATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAGTCAAC 437149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755446065753600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |