Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq124 149 5e-31 seq14 143 2e-29 seq4 136 3e-27 seq21 118 9e-22 seq15 104 2e-17 >seq124 Length=632428 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||| | | ||||||||||| || ||||||||||| |||||||||||| | Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || || |||||||| ||||||||| |||| || | |||||| || || || Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || |||||||| |||||| || || | || | || || | || || ||| Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||||||||| || || ||| || ||| | || || || || |||||| Sbjct 447041 GTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCA 447100 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || | |||||| || || || |||||||| || ||| |||||| || Sbjct 447101 GCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTTC 447160 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| |||| ||||| ||||| | || | ||||| || || | || Sbjct 447161 ACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTC 447220 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 447221 TTCACAAAAATCTGCAT 447237 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||||||||||||| | ||| || ||| || ||||| || || Sbjct 447269 GTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCT 447328 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || | ||||| || ||||| || || ||||||||| ||| || ||| Sbjct 447329 GCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTAGCTTTG 447388 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| || ||||| | || | || || || || || ||| Sbjct 447389 ACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTT 447448 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||| ||||| Sbjct 447449 TTGACGAAAATTTGCAT 447465 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGC--GCGTATCCT 118587 ||||| || | || ||||||||||||||||| || ||| || ||| | ||| | | Sbjct 354468 ACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCGTGT--T 354411 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | || || ||||||||| | || | | |||||| || || || |||||||| || ||| Sbjct 354410 CCAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTTCT- 354352 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA-CCTCGACGGTCACCGTT 118706 | || || || || | |||| ||| || | ||| || | |||| | ||| | ||| Sbjct 354351 TGATCTTGGCYTTCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGATGGTT 354292 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || || || ||||| Sbjct 354291 TTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260 >seq14 Length=2855554 Score = 143 bits (158), Expect = 2e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || |||||||| |||||||||||||| || ||| ||| |||||| || || Sbjct 999775 GTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTG 999716 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| ||||| |||| | | ||| ||||| ||||| || |||||||||||| ||| || Sbjct 999715 TTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTT 999656 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | || || | |||| ||||||| ||| |||||||| | || | ||| || || || Sbjct 999655 TGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGT 999596 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| |||||||| Sbjct 999595 CAGTGTCTTCACAAAGATCTGCAT 999572 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCT 118570 || ||||| |||| | |||||| || | || || || ||||| ||||||||||| ||| Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | ||| ||||| || || || ||| |||| | | ||| || || || || Sbjct 999510 AA-AGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGG 999452 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||||||||||||| ||| ||| || || | || | ||| || | |||||| || Sbjct 999451 GATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCAC 999392 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| |||| ||||| |||||||||||||| Sbjct 999391 TTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || |||| | ||||| ||| | ||| || || || || ||||| ||||| | Sbjct 999114 CCACCACGCAATCGGAGCACCAGGTGCAGTGTCGATTCCTTCTGGATGTTATAATCTGCC 999055 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | || ||||| || || ||||| |||| | | ||| || || || || Sbjct 999054 AGAGTCCTACCGTCTTCGAGTTGCTTACCAGCAAAGATCAACCTCTGTTGGTCAGGTGGA 998995 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||| ||| || || ||| || | |||| || || | |||||||||| Sbjct 998994 ATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTATCGATTGTATCAGAGCTCTCGACC 998935 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | |||||||| |||| ||||| |||||||||||||| Sbjct 998934 TCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTAACAAAAATCTGCAT 998888 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||| || || || || ||||||||||| || ||| | ||| || Sbjct 999325 CACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCCAGAGTCCTACCATCTTC 999266 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || ||||| |||| || | ||| || || || || ||||||||||||||| Sbjct 999265 TAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTG 999206 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | || | ||| || | |||||| || || | || | ||| || Sbjct 999205 GATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACTTCCAAAGTGATCGTCTT 999146 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || |||||||||||||| Sbjct 999145 GCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116 >seq4 Length=5448771 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | || ||||| | ||||| || ||||| || || |||||||||||| Sbjct 199546 ACCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 199605 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || || ||||| ||||| || ||||| |||||||||||||||| || || || Sbjct 199606 TAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGG 199665 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||| ||||||||||| ||| ||| || || | |||| ||| || | |||||| || Sbjct 199666 TATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAAC 199725 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || |||| ||||| ||||| |||||||| Sbjct 199726 CTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | || | ||| | ||| | || |||||||| || |||||||| ||| Sbjct 205221 ACCTCCACGGAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGC 205280 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| || |||||| ||||| || ||||| | |||||||||||||| || || || Sbjct 205281 AAGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGG 205340 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||| ||||||||||| ||| || || || | |||| ||| || | |||||||| Sbjct 205341 TATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGAC 205400 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || ||||| ||||| || || |||||||| Sbjct 205401 CTCGAGAGTTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 >seq21 Length=2013095 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||||| || || ||||| || ||| || ||| | ||||| Sbjct 1809665 CACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTC 1809606 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| ||| |||| || | |||||| || || || || ||||| |||||| Sbjct 1809605 CAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTG 1809546 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||||| ||||| ||||| | ||| | ||||| Sbjct 1809545 GATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTT 1809486 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || ||||||||||| Sbjct 1809485 CCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||| |||||||| | ||| | |||||| ||||| || || Sbjct 1809880 GTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCT 1809821 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || | |||||||| ||||| || ||||||||||| |||||| ||| Sbjct 1809820 GCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTTGGCTTTC 1809761 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | |||||| ||||| | || | || || || |||| ||| Sbjct 1809760 ACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTT 1809701 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 1809700 TTCACAAAGATTTGCAT 1809684 >seq15 Length=2492501 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||||||||| || ||| | | |||||| ||||| |||||| Sbjct 255642 GTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCCAGCTGCTTTCCA 255701 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || ||||| || ||||||||||| ||| || || Sbjct 255702 GCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGAATCTTCGCCTTC 255761 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | |||||| ||||| | ||| | || || ||||| || || Sbjct 255762 ACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTC 255821 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 255822 TTCACGAAGATCTGCAT 255838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433824837751984