Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq124 149 5e-31
seq14 143 2e-29
seq4 136 3e-27
seq21 118 9e-22
seq15 104 2e-17
>seq124
Length=632428
Score = 149 bits (164), Expect = 5e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| |||||||| | | ||||||||||| || ||||||||||| |||||||||||| |
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || || |||||||| ||||||||| |||| || | |||||| || || ||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| || |||||||| |||||| || || | || | || || | || || |||
Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | ||| | ||||||||||| |||||||| ||||| ||||||||
Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| |||||||||||||| || || ||| || ||| | || || || || ||||||
Sbjct 447041 GTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCA 447100
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || || | |||||| || || || |||||||| || ||| |||||| ||
Sbjct 447101 GCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTTC 447160
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||| |||| ||||| ||||| | || | ||||| || || | ||
Sbjct 447161 ACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTC 447220
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||||||||||||
Sbjct 447221 TTCACAAAAATCTGCAT 447237
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| |||||||||||||||||| | ||| || ||| || ||||| || ||
Sbjct 447269 GTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCT 447328
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || || | ||||| || ||||| || || ||||||||| ||| || |||
Sbjct 447329 GCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTAGCTTTG 447388
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||| | ||| || ||||| | || | || || || || || |||
Sbjct 447389 ACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTT 447448
Query 118722 TTTACAAAAATCTGCAT 118738
|| || ||||| |||||
Sbjct 447449 TTGACGAAAATTTGCAT 447465
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGC--GCGTATCCT 118587
||||| || | || ||||||||||||||||| || ||| || ||| | ||| | |
Sbjct 354468 ACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCGTGT--T 354411
Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
| || || ||||||||| | || | | |||||| || || || |||||||| || |||
Sbjct 354410 CCAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTTCT- 354352
Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA-CCTCGACGGTCACCGTT 118706
| || || || || | |||| ||| || | ||| || | |||| | ||| | |||
Sbjct 354351 TGATCTTGGCYTTCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGATGGTT 354292
Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || ||||| || || || |||||
Sbjct 354291 TTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260
>seq14
Length=2855554
Score = 143 bits (158), Expect = 2e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || |||||||| |||||||||||||| || ||| ||| |||||| || ||
Sbjct 999775 GTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTG 999716
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
||| ||||| |||| | | ||| ||||| ||||| || |||||||||||| ||| ||
Sbjct 999715 TTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTT 999656
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
| || || | |||| ||||||| ||| |||||||| | || | ||| || || ||
Sbjct 999655 TGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGT 999596
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
||| || || ||||| ||||||||
Sbjct 999595 CAGTGTCTTCACAAAGATCTGCAT 999572
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCT 118570
|| ||||| |||| | |||||| || | || || || ||||| ||||||||||| |||
Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
| ||| | ||| ||||| || || || ||| |||| | | ||| || || || ||
Sbjct 999510 AA-AGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGG 999452
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
||||||||||||||| ||| ||| || || | || | ||| || | |||||| ||
Sbjct 999451 GATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCAC 999392
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | || | || ||||| |||| ||||| ||||||||||||||
Sbjct 999391 TTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| || || |||| | ||||| ||| | ||| || || || || ||||| ||||| |
Sbjct 999114 CCACCACGCAATCGGAGCACCAGGTGCAGTGTCGATTCCTTCTGGATGTTATAATCTGCC 999055
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| | || ||||| || || ||||| |||| | | ||| || || || ||
Sbjct 999054 AGAGTCCTACCGTCTTCGAGTTGCTTACCAGCAAAGATCAACCTCTGTTGGTCAGGTGGA 998995
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
||||||||||| ||| || || ||| || | |||| || || | ||||||||||
Sbjct 998994 ATGCCCTCCTTATCTTGGATCTTGGCTTTCACATTATCGATTGTATCAGAGCTCTCGACC 998935
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | ||| | |||||||| |||| ||||| ||||||||||||||
Sbjct 998934 TCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTAACAAAAATCTGCAT 998888
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | ||| || || || || ||||||||||| || ||| | ||| ||
Sbjct 999325 CACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCCAGAGTCCTACCATCTTC 999266
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|| || || ||||| |||| || | ||| || || || || |||||||||||||||
Sbjct 999265 TAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTG 999206
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || ||| || | || | ||| || | |||||| || || | || | ||| ||
Sbjct 999205 GATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACTTCCAAAGTGATCGTCTT 999146
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||| || || ||||||||||||||
Sbjct 999145 GCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116
>seq4
Length=5448771
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | || ||||| | ||||| || ||||| || || ||||||||||||
Sbjct 199546 ACCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 199605
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
| || || ||||| ||||| || ||||| |||||||||||||||| || || ||
Sbjct 199606 TAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGG 199665
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
||| ||||||||||| ||| ||| || || | |||| ||| || | |||||| ||
Sbjct 199666 TATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAAC 199725
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | || || || |||| ||||| ||||| ||||||||
Sbjct 199726 CTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
|||||| || | || | ||| | ||| | || |||||||| || |||||||| |||
Sbjct 205221 ACCTCCACGGAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGC 205280
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
| ||| || |||||| ||||| || ||||| | |||||||||||||| || || ||
Sbjct 205281 AAGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGG 205340
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
||| ||||||||||| ||| || || || | |||| ||| || | ||||||||
Sbjct 205341 TATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGAC 205400
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | || || || ||||| ||||| || || ||||||||
Sbjct 205401 CTCGAGAGTTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448
>seq21
Length=2013095
Score = 118 bits (130), Expect = 9e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | |||||||| || || ||||| || ||| || ||| | |||||
Sbjct 1809665 CACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTC 1809606
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| ||||| ||| |||| || | |||||| || || || || ||||| ||||||
Sbjct 1809605 CAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTG 1809546
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | || | |||||||| ||||| ||||| | ||| | |||||
Sbjct 1809545 GATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTT 1809486
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||||| || || || |||||||||||
Sbjct 1809485 CCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||| |||||||| | ||| | |||||| ||||| || ||
Sbjct 1809880 GTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCT 1809821
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || || | |||||||| ||||| || ||||||||||| |||||| |||
Sbjct 1809820 GCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTTGGCTTTC 1809761
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | |||||| | |||||| ||||| | || | || || || |||| |||
Sbjct 1809760 ACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTT 1809701
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| || |||||
Sbjct 1809700 TTCACAAAGATTTGCAT 1809684
>seq15
Length=2492501
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || ||||||||||| || ||| | | |||||| ||||| ||||||
Sbjct 255642 GTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCCAGCTGCTTTCCA 255701
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| | | |||||| || ||||| || ||||||||||| ||| || ||
Sbjct 255702 GCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGAATCTTCGCCTTC 255761
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | || || | |||||| ||||| | ||| | || || ||||| || ||
Sbjct 255762 ACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTC 255821
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 255822 TTCACGAAGATCTGCAT 255838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433824837751984
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