Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 105 8e-18 seq15 102 9e-17 seq21 100 3e-16 seq124 98.7 1e-15 seq14 96.9 4e-15 seq99 84.2 3e-11 >seq4 Length=5448771 Score = 105 bits (116), Expect = 8e-18 Identities = 145/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || || || || |||| || |||||||||||||| || Sbjct 199582 CTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAA 199641 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||| | ||| | | |||||||||| ||| | |||| || | Sbjct 199642 GATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCC-TGAATCTTTGCCTTCACAT 199700 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || |||| || || |||| || ||||| || ||||| | ||| | Sbjct 199701 TGTCGATGGTATCGGAGCTC---TCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGTTT 199757 Query 43168 TTACAAAGATTTGCATTTT 43186 | |||||||| ||||| || Sbjct 199758 TCACAAAGATCTGCATATT 199776 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| || || ||||| || | || || |||||||||||||| || Sbjct 205257 CTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAA 205316 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 ||||| ||||||||||| | ||| | | |||||||||| Sbjct 205317 AATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCC 205356 >seq15 Length=2492501 Score = 102 bits (112), Expect = 9e-17 Identities = 143/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||||||||||| | | || || |||||||| ||||| || Sbjct 255647 CTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAA 255706 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | |||||||||| ||| | || | | ||| Sbjct 255707 GATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCC-TGAATCTTCGCCTTCACGT 255765 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||| || |||| ||||| || | |||||||| || || || || |||| Sbjct 255766 TGTCAATCGTATCTGAGCTC---TCCACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTCT 255822 Query 43168 TTACAAAGATTTGCATT 43184 | || ||||| |||||| Sbjct 255823 TCACGAAGATCTGCATT 255839 >seq21 Length=2013095 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||||||||| ||||||| | || || |||||||| || ||||| Sbjct 1809875 CTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAA 1809816 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || | ||||| || | || | | |||||||||| ||| |||| | ||| | Sbjct 1809815 AATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTCACAT 1809757 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| || | |||||||| || || || | || | Sbjct 1809756 TGTCAATGGTGTCGGAGCTC---TCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTTT 1809700 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||||||||| Sbjct 1809699 TCACAAAGATTTGCAT 1809684 >seq124 Length=632428 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||||||||| ||||| ||||||||||| ||||||||||| || | Sbjct 447478 ACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCC 447537 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || || ||||| ||||| || || | ||||||||| | || | | ||| || Sbjct 447538 ATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTT 447597 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 || ||| || || | | | | || || ||| |||||| || | || Sbjct 447598 ATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCT---TTCCACCTCCAAGGT 447654 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||| || || || || || || ||||||||||| Sbjct 447655 GATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| |||||||| || |||||||| | || || |||||||| || ||||| Sbjct 447274 CTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAA 447333 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || | |||||||| | || | | ||||||| | ||| | || | ||||| Sbjct 447334 AATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGT-CTTGAATCTTAGCTTTGACAT 447392 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || | ||||| || || ||||| ||||| || | Sbjct 447393 TGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGA 447452 Query 43171 CAAAGATTTGCATT 43184 | || ||||||||| Sbjct 447453 CGAAAATTTGCATT 447466 >seq14 Length=2855554 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| || || | |||||| |||| ||| ||||| || || |||||||| ||| Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | || ||||| ||||||||||| || || || | ||| ||||| | || Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||||||||| ||| || ||| | | | | || || |||| ||| Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTC---TCC 999166 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || ||||| || | ||||| ||||| || ||||| Sbjct 999165 ACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116 >seq99 Length=823807 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC- 60131 || ||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||| Sbjct 436067 GCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACA 436008 Query 60132 -CGAGGATTGAATATATAACTTGAATATTA 60160 ||| || ||||| || | ||||||| Sbjct 436007 ACGACATTTTAATATTAAATTAAAATATTA 435978 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||| Sbjct 424647 GCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTCACCACTATACTACA 424588 Query 60133 GAGGATTGAATATATAA-CTTG-AATATTACAAT 60164 | ||| | ||| || | || ||||||| ||| Sbjct 424587 ACGACTTGCAGATAAAAGCGTGAAATATTATAAT 424554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810080598560