Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq124 116 2e-21 seq14 109 4e-19 seq4 109 4e-19 >seq124 Length=632428 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||||| ||||||||||| |||| ||| ||| |||| Sbjct 447710 AGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCT 447769 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || |||| ||||||||| || | | |||||||| Sbjct 447770 TCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTC- 447828 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||||| || | | || | ||| | ||| || || | || || | Sbjct 447829 -CTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTG 447887 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||||||||||||||||| ||||||||| Sbjct 447888 TTTTGCCGGTGAGAGTTTTCACAAATATCTGCATC 447922 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||| || || || ||| ||||| || |||||||| | Sbjct 447466 TCCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGC 447525 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | || || || |||||||| |||| ||||||||| || Sbjct 447526 CAGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGG 447585 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || ||||| ||| | || | | || | ||| | ||| || Sbjct 447586 AATACCCTCTTTATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCCAC 447645 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||||||||| || ||||| |||||||| ||||| |||||| Sbjct 447646 CTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCATC 447694 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| |||| || ||||| ||||| || ||||| ||||||| | Sbjct 354486 CCACCACGAAGACGCAGTACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCC 354427 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | | ||| |||| ||||| || |||||||| | || ||||||||| || Sbjct 354426 AAAGTCCTGCCGTGTTCCAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGTGGG 354367 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| || || ||||| || | || | | || | ||| | ||| || Sbjct 354366 ATGCCCTCTTTTTCTTG-ATCTTGGCYTTCACATTGTCGATGGTATCAGAGCTTTCCACC 354308 Query 34343 -TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||||||||| || ||||| |||||||| ||||| |||||| Sbjct 354307 CTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCATC 354259 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | ||||| || || | ||| || || || |||||||| |||| Sbjct 447238 TCCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGC 447297 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACG 34279 || || | || || | |||||||||||||||||| |||| |||||||| || | Sbjct 447298 AAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGG 447357 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTC 34338 | || || |||||||| ||| || ||||| | || | | || | |||| ||| Sbjct 447358 GATAC-CT-TCCTTGTCTTGAATC-TTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTC 447414 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||| || || || ||||| ||||| || || || ||||| Sbjct 447415 AACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465 >seq14 Length=2855554 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || || |||||||| || | |||| ||| ||||| || ||||| |||| Sbjct 998658 CCACCGCGAAGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCA 998599 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||| || ||||| || |||| ||||||||| || Sbjct 998598 AGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGA 998539 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| || || |||||| ||||| || | | || | ||| | ||| || Sbjct 998538 ATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACC 998479 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| |||||||| |||||||||||||| ||||| |||||| Sbjct 998478 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCATC 998431 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||| ||||||| || |||||| ||||||||| || |||||||| | Sbjct 998886 CCCCCACGAAGCCGAAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCA 998827 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | |||||| || || ||||| |||| ||| || || || Sbjct 998826 AGAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGG 998767 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || || || ||| | || | | |||| ||| | ||| || Sbjct 998766 ATACCCTCCTTATCTTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACC 998707 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||||||||| || || || |||||||| || |||||| Sbjct 998706 TCAAGCGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCATC 998659 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG-- 34220 || ||||||| | ||||||| || | ||| ||| || || |||||||| || | Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | || | | | | || || | |||||||||||||| || | || ||| ||||| | Sbjct 999510 AAAGTT--CTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTG 999453 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| |||||| ||| | || | || | ||||| || | Sbjct 999452 GGATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCA 999393 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | |||| ||||| || ||||| || | ||||||||||| ||||||||| Sbjct 999392 CTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCATC 999343 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||| || ||||||| ||| | || ||| |||||||||||||| || | | Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || || | ||||| || || || || |||| ||| ||||| || Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||| || ||||| | || | | || | ||| | || || Sbjct 999222 ATGCCCTCCTTGTCTTGGATC-TTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCAC 999164 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| || ||||| || | || |||||||| ||||||||| Sbjct 999163 TTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCATC 999115 >seq4 Length=5448771 Score = 109 bits (120), Expect = 4e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 34153 TTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTT 34212 ||| | ||| || || || ||||| ||||| ||||||| || |||||||| ||||| Sbjct 205213 TTCTTAGAA-CCTCCACGGAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTT 205271 Query 34213 GTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTG 34272 |||||||| || || | || |||| |||||| || || |||||||| |||||||| Sbjct 205272 GTAGTCGGCAAGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTG 205331 Query 34273 GTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGT 34332 ||| || | | ||||||||| ||||| ||| | || | || | ||| | Sbjct 205332 GTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGA 205391 Query 34333 CGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || ||||| || || || || |||||||| ||||||||||| Sbjct 205392 ACTCTCGACCTCGAGAGTTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| | ||| ||||| | || || ||||| |||||||| |||| Sbjct 199547 CCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCT 199606 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || || || ||||| ||||||||||| || Sbjct 199607 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGT 199666 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| ||| | || | | || | ||||| || || Sbjct 199667 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACC 199726 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| || || || | |||||||||||||||||||| Sbjct 199727 TCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067857813120