Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq21 107 2e-18 seq14 105 5e-18 seq15 102 6e-17 seq4 98.7 8e-16 seq124 82.4 6e-11 >seq21 Length=2013095 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| ||||| |||||| ||| | | |||| ||| Sbjct 1809664 ACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCC 1809605 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| || ||| ||||| || || | ||||| ||||| Sbjct 1809604 AGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGG 1809545 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| || ||| ||||||| |||||| || || Sbjct 1809544 ATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTC 1809485 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || || || ||||| Sbjct 1809484 CCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||| ||||| || || | | || ||||| || Sbjct 1809887 GTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTG 1809828 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| || || || || ||||| | ||||||||||||| |||||| Sbjct 1809827 CTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTT 1809768 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | |||| | ||||||||||| || || ||||| || || Sbjct 1809767 GGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCAGT 1809708 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||||||||| Sbjct 1809707 CAAGGTTTTCACAAAGATTTGCAT 1809684 >seq14 Length=2855554 Score = 105 bits (116), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 ||| |||||||||||||| || || ||| || | || ||||||||||| || || Sbjct 999763 CTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCC--CATCCTCCAGTTGTTTCCCAGCA 999706 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || ||||| | |||||| || ||||| | ||||||||||| ||| ||| ||| || Sbjct 999705 AAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTTGCCTTCACG 999646 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 | | ||||| | || ||||||| || |||||||| || ||||| |||||| Sbjct 999645 TTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCTTC 999586 Query 45323 ACAAAGATTTGCAT 45336 |||||||| ||||| Sbjct 999585 ACAAAGATCTGCAT 999572 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--T 45167 ||||| | ||||| | ||||| ||||| || ||||| || |||||||| || | Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 45168 TCAGTTG-GCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 |||| || ||| ||| ||||| || || ||||| ||||||| ||||||||| || Sbjct 999510 AAAGTTCTGCCATCTTCG---AGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGT 999454 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||||||||||| ||| ||| ||| || | | | | || | |||| Sbjct 999453 GGGATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCC 999394 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || |||| || || |||||||| |||| || |||||||| || ||||| ||||| Sbjct 999393 ACTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCATCCCGCCTC 999336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| || ||||| ||| || ||| | || || ||||| || || ||||| Sbjct 998622 TCCTTCTGGATATTGTAATCGGCAAGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAG 998563 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || || ||||||||||| | ||||| || || || ||| ||| || Sbjct 998562 ATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTG 998503 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | | ||| || |||||||| | ||| || || ||||| || ||||| ||||| Sbjct 998502 TCAATGGTATCCGAACTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACG 998443 Query 45326 AAGATTTGCAT 45336 ||||||||||| Sbjct 998442 AAGATTTGCAT 998432 >seq15 Length=2492501 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||| || ||| | | || ||||| || Sbjct 255635 GTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCCAGCTG 255694 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || ||||||| ||| ||||| ||||| | |||||||||||| ||| || Sbjct 255695 CTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGAATCTT 255754 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 ||| | || | || | | || | ||||||||||| ||| || ||||| || | Sbjct 255755 CGCCTTCA-CGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCGG 255813 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 | || |||||||| ||||| ||||| Sbjct 255814 TAAGGGTCTTCACGAAGATCTGCAT 255838 >seq4 Length=5448771 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 ||||| || | ||| |||||| ||||||||| |||||||| ||| || || || Sbjct 199559 CTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCG 199618 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || || || || || || || | ||||| ||||| || || | ||||||||| Sbjct 199619 TCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTG 199678 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||| ||| ||| || | | | | || | ||| ||||| | || || Sbjct 199679 TCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATG 199738 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| ||||||| || ||||||||||| ||||| ||| Sbjct 199739 GTCTTCCCCGTCAACGTTTTCACAAAGATCTGCATATTG 199777 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 |||| || | ||| || ||| ||| ||||| |||||||||||| || ||| | Sbjct 205234 CTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCA 205293 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || || || || || || | ||||| ||||| || || | ||||||||| Sbjct 205294 TCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTG 205353 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||| || ||| || | | | | || || ||| ||||| | || || Sbjct 205354 TCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATG 205413 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || ||||| || ||||| ||||| ||||| Sbjct 205414 GTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 >seq124 Length=632428 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| ||| || ||| || ||||| || |||||| || | |||| || Sbjct 447028 TACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTC 447087 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 |||||| ||||| ||||| |||| || ||| ||||| || || | ||||| || || Sbjct 447088 CAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTG 447147 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| ||| || | | | | ||| || ||| ||||||| || || || || Sbjct 447148 AATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTT 447207 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| | ||||||||||| || ||||| Sbjct 447208 TCCCGTTAAGGTCTTCACAAAAATCTGCAT 447237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070134642092