Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 223 3e-53 seq124 113 4e-20 seq14 91.5 1e-13 >seq6 Length=5093711 Score = 223 bits (246), Expect = 3e-53 Identities = 598/897 (67%), Gaps = 28/897 (3%) Strand=Plus/Plus Query 57531 CCCCG-TAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAA 57589 ||||| |||||| |||||| || ||||| ||||| | || ||| | |||||||| || Sbjct 4851643 CCCCGATAGATTCTGCATGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAA 4851702 Query 57590 GGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTG 57649 || || ||||| ||||||| || || || ||||| || |||| || || |||| Sbjct 4851703 AGCCATGGCCTCGTTCTGGACCGCTGAGGAGGTCGACCTCTCACAGGACCTCCGCCATTG 4851762 Query 57650 GGATTCCCTCAAAGAATCTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706 ||| ||||| | | || || || |||| || ||||| |||| || ||||| Sbjct 4851763 GGAAGGCCTCACGG---CCGACGAAAAGCATTTCATCTCCCACGTTCTGGCCTTCTTCGC 4851819 Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766 ||| ||||||||||| ||| |||||| | | || | || | || || || || Sbjct 4851820 CGCCTCCGATGGTATCGTTCTGGAGAATCTCGCCGGCCGGTTCATGAAGGAGGTTCAGGT 4851879 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 ||||||| ||| || || || || ||| | || ||||| ||| | || || || || Sbjct 4851880 TGCGGAGGCTAGAGCGTTCTATGGCTTCCAAATCGCAATTGAGAACATTCACTCCGAGAT 4851939 Query 57827 GTA---TTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTT 57883 ||| || | | | |||| || ||| | |||||| | |||||| || |||| Sbjct 4851940 GTACAGTTTGTTGC---TCGAAACCTACATCAAGGACTCAGTCGAGAAGAACAGGTTGTT 4851996 Query 57884 CAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA 57942 | |||| ||||| || | || ||| |||| ||||| || |||||| | | ||||||| Sbjct 4851997 CCACGCCATCGAGACTGTACCTTGCG-TCGCGAAGAAAGCCGAGTGGGCGCTAAAATGGA 4852055 Query 57943 TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTA 58002 | | || | | | |||| || ||| | || || | ||||| || ||||||| Sbjct 4852056 TCGA---CGGCTCCGAGTCGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTA 4852112 Query 58003 TATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCC 58061 | ||||| ||||| || || ||| || ||||| ||| |||||||||| ||||| ||||| Sbjct 4852113 TTTTCTTCTCGGGAAGTTTCTGC-GCCATATTCTGGCTGAAGAAACGAGGCCTTATGCCA 4852171 Query 58062 GGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCG 58121 || |||| || ||||| ||||| || || ||||| || || || ||||| ||| Sbjct 4852172 GGATTGACATTCTCAAACGAATTGATCTCCCGAGACGAAGGCCTGCACTGCGATTTCGCG 4852231 Query 58122 TGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATC 58181 ||| | ||||||||| || ||| ||| || | || || || | ||| Sbjct 4852232 TGCTTGCTGTACTCTCTGATGAGGAATCAACTGA---GCGACGACAAAGTGAAGGGGATC 4852288 Query 58182 -ACCG--AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATG 58238 ||| ||||||| | ||||| | || || || ||| || || ||| || || Sbjct 4852289 GTCCGGCAGGCGGTGGATATCGAGAGGGAATTCGTGTGCGATGCACTGCCGTGCGCGTTG 4852348 Query 58239 CTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 | || |||||| ||| ||||| ||||||| ||||| ||||| ||| | | || Sbjct 4852349 GTGGGGATGAACGGCGATCTGATGAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTG 4852408 Query 58299 CTCGAACTGATTGGAGAGCGTCA-TTACAACACGAAAAATCCGTTTGATTTTATGAATCT 58357 | | || | | | ||| | |||||| | || ||||| |||| ||| | | Sbjct 4852409 GTAGCCCT-AGGGCACAGCAAGATTTACAATGTACAGAACCCGTTCGATTGGATGGAATT 4852467 Query 58358 GATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 ||| ||||| |||| || || ||||| ||||| || | || | || ||||| || Sbjct 4852468 GATATCGCTGCAGGGGAAAACCAACTTCTTCGAGAAGAGGGTGGGAGAGTATCAGAA 4852524 >seq124 Length=632428 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || || || ||||| | || |||||| ||| Sbjct 447465 ATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTCC 447406 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||||| | || || |||||| Sbjct 447405 GACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 447346 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | ||||| ||||| ||||| ||| | ||||| |||| | |||||| ||| Sbjct 447345 CAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGCCGATTACAAC 447286 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || || ||||||||||| || || Sbjct 447285 ATTCAAAAGGAGTCAACTCTTCATCTAGTGCT 447254 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||||| || |||||||| || ||| | || |||||| || Sbjct 447921 ATGCAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTTCT 447862 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | ||| |||||||||||| | || || |||||| Sbjct 447861 GATACTATTGACAATGTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACCAG 447802 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | ||||| |||||||| || ||| | |||||| || || |||||| ||| Sbjct 447801 CAGAGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACAAC 447742 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || |||||||| || || || || |||| || Sbjct 447741 ATACAAAAAGAGTCCACGCTCCACTTGGTGCT 447710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG-TC 31251 |||||||| ||||| || || || || || ||||| |||||| | || | || | | || Sbjct 354260 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTC 354319 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCG-GACAAGGAAGGCGTGCCGCCCGACC 31310 || | |||| | || || | || | | || || || ||| | || || |||| Sbjct 354320 TGATACCATCGACAATGTGAAR--GCCAAGATCAAGAAAAAGAGGGCATCCCACCAGACC 354377 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | | || |||||||| || || ||||| || | |||| || ||| |||| Sbjct 354378 AGCAGAGGTTGATTTTCGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTATA 354437 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||||| |||||| | ||| ||||||| Sbjct 354438 ACATTCAAAAAGAGTCGACTTTGCATTTGGTACT 354471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| | || || ||||| ||||| | || ||||| || Sbjct 447237 ATGCAGATTTTTGTGAAGACCTTAACGGGAAAAACAATCACTCTGGAGGTTGAGAGTTCG 447178 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| || || || ||| | || || |||||| Sbjct 447177 GATACCATCGACAACGTGAAGGCTAAAATTCAAGATAAAGAGGGCATCCCACCAGACCAG 447118 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| || || |||||||| | |||| || ||| ||||| Sbjct 447117 CAGAGGCTGATTTTCGCTGGAAAGCAACTGGAAGACGGCAGGACTTTGGCCGACTATAAT 447058 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||| |||||| ||| ||||||| Sbjct 447057 ATTCAAAAAGAGTCGACTTCGCATTTGGTACT 447026 >seq14 Length=2855554 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || |||||||| |||||| |||| || ||| || Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | || || || || | || |||||||| Sbjct 998492 GATACCATTGACAATGTAAAGGCAAAGA-TCCAAGATAAAGAGGGAATTCCTCCCGACCA 998550 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || |||||||| || || | || || | || | |||||| || Sbjct 998551 GCAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAA 998610 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || ||||| |||||||||||||| |||||||| Sbjct 998611 TATCCAGAAGGAATCTACTCTTCATCTGGTGCTTAGACT 998649 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || || |||| |||||||| |||||| | || || || || Sbjct 998888 ATGCAGATTTTTGTTAAAACCTTGACTGGCAAAACAATCACCTTGGAGGTCGAGAGCTCT 998947 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || ||| | || || ||||| ||| | || || ||||| Sbjct 998948 GATACAATCGATAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 999007 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || | |||||| || |||| || ||||||||| Sbjct 999008 CAGAGGTTGATCTTTGCTGGTAAGCAACTCGAAGACGGTAGGACTCTGGCAGATTATAAC 999067 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || |||||||| || || ||||| || Sbjct 999068 ATCCAGAAGGAATCGACACTGCACCTGGTGCT 999099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760538171840