Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq6 223 3e-53
seq124 113 4e-20
seq14 91.5 1e-13
>seq6
Length=5093711
Score = 223 bits (246), Expect = 3e-53
Identities = 598/897 (67%), Gaps = 28/897 (3%)
Strand=Plus/Plus
Query 57531 CCCCG-TAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAA 57589
||||| |||||| |||||| || ||||| ||||| | || ||| | |||||||| ||
Sbjct 4851643 CCCCGATAGATTCTGCATGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAA 4851702
Query 57590 GGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTG 57649
|| || ||||| ||||||| || || || ||||| || |||| || || ||||
Sbjct 4851703 AGCCATGGCCTCGTTCTGGACCGCTGAGGAGGTCGACCTCTCACAGGACCTCCGCCATTG 4851762
Query 57650 GGATTCCCTCAAAGAATCTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706
||| ||||| | | || || || |||| || ||||| |||| || |||||
Sbjct 4851763 GGAAGGCCTCACGG---CCGACGAAAAGCATTTCATCTCCCACGTTCTGGCCTTCTTCGC 4851819
Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766
||| ||||||||||| ||| |||||| | | || | || | || || || ||
Sbjct 4851820 CGCCTCCGATGGTATCGTTCTGGAGAATCTCGCCGGCCGGTTCATGAAGGAGGTTCAGGT 4851879
Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826
||||||| ||| || || || || ||| | || ||||| ||| | || || || ||
Sbjct 4851880 TGCGGAGGCTAGAGCGTTCTATGGCTTCCAAATCGCAATTGAGAACATTCACTCCGAGAT 4851939
Query 57827 GTA---TTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTT 57883
||| || | | | |||| || ||| | |||||| | |||||| || ||||
Sbjct 4851940 GTACAGTTTGTTGC---TCGAAACCTACATCAAGGACTCAGTCGAGAAGAACAGGTTGTT 4851996
Query 57884 CAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA 57942
| |||| ||||| || | || ||| |||| ||||| || |||||| | | |||||||
Sbjct 4851997 CCACGCCATCGAGACTGTACCTTGCG-TCGCGAAGAAAGCCGAGTGGGCGCTAAAATGGA 4852055
Query 57943 TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTA 58002
| | || | | | |||| || ||| | || || | ||||| || |||||||
Sbjct 4852056 TCGA---CGGCTCCGAGTCGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTA 4852112
Query 58003 TATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCC 58061
| ||||| ||||| || || ||| || ||||| ||| |||||||||| ||||| |||||
Sbjct 4852113 TTTTCTTCTCGGGAAGTTTCTGC-GCCATATTCTGGCTGAAGAAACGAGGCCTTATGCCA 4852171
Query 58062 GGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCG 58121
|| |||| || ||||| ||||| || || ||||| || || || ||||| |||
Sbjct 4852172 GGATTGACATTCTCAAACGAATTGATCTCCCGAGACGAAGGCCTGCACTGCGATTTCGCG 4852231
Query 58122 TGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATC 58181
||| | ||||||||| || ||| ||| || | || || || | |||
Sbjct 4852232 TGCTTGCTGTACTCTCTGATGAGGAATCAACTGA---GCGACGACAAAGTGAAGGGGATC 4852288
Query 58182 -ACCG--AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATG 58238
||| ||||||| | ||||| | || || || ||| || || ||| || ||
Sbjct 4852289 GTCCGGCAGGCGGTGGATATCGAGAGGGAATTCGTGTGCGATGCACTGCCGTGCGCGTTG 4852348
Query 58239 CTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298
| || |||||| ||| ||||| ||||||| ||||| ||||| ||| | | ||
Sbjct 4852349 GTGGGGATGAACGGCGATCTGATGAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTG 4852408
Query 58299 CTCGAACTGATTGGAGAGCGTCA-TTACAACACGAAAAATCCGTTTGATTTTATGAATCT 58357
| | || | | | ||| | |||||| | || ||||| |||| ||| | |
Sbjct 4852409 GTAGCCCT-AGGGCACAGCAAGATTTACAATGTACAGAACCCGTTCGATTGGATGGAATT 4852467
Query 58358 GATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414
||| ||||| |||| || || ||||| ||||| || | || | || ||||| ||
Sbjct 4852468 GATATCGCTGCAGGGGAAAACCAACTTCTTCGAGAAGAGGGTGGGAGAGTATCAGAA 4852524
>seq124
Length=632428
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| || || || || || || || ||||| | || |||||| |||
Sbjct 447465 ATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTCC 447406
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | || ||||||||||| | || || ||||||
Sbjct 447405 GACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 447346
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | ||||| ||||| ||||| ||| | ||||| |||| | |||||| |||
Sbjct 447345 CAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGCCGATTACAAC 447286
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||||| || || ||||||||||| || ||
Sbjct 447285 ATTCAAAAGGAGTCAACTCTTCATCTAGTGCT 447254
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || || ||||| || |||||||| || ||| | || |||||| ||
Sbjct 447921 ATGCAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTTCT 447862
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | || | || || | ||| |||||||||||| | || || ||||||
Sbjct 447861 GATACTATTGACAATGTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACCAG 447802
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | ||||| |||||||| || ||| | |||||| || || |||||| |||
Sbjct 447801 CAGAGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACAAC 447742
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| |||||||| || || || || |||| ||
Sbjct 447741 ATACAAAAAGAGTCCACGCTCCACTTGGTGCT 447710
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG-TC 31251
|||||||| ||||| || || || || || ||||| |||||| | || | || | | ||
Sbjct 354260 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTC 354319
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCG-GACAAGGAAGGCGTGCCGCCCGACC 31310
|| | |||| | || || | || | | || || || ||| | || || ||||
Sbjct 354320 TGATACCATCGACAATGTGAAR--GCCAAGATCAAGAAAAAGAGGGCATCCCACCAGACC 354377
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
||||| | | || |||||||| || || ||||| || | |||| || ||| ||||
Sbjct 354378 AGCAGAGGTTGATTTTCGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTATA 354437
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||||||||||| |||||| | ||| |||||||
Sbjct 354438 ACATTCAAAAAGAGTCGACTTTGCATTTGGTACT 354471
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || ||||| | || || ||||| ||||| | || ||||| ||
Sbjct 447237 ATGCAGATTTTTGTGAAGACCTTAACGGGAAAAACAATCACTCTGGAGGTTGAGAGTTCG 447178
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || || | ||| || || || ||| | || || ||||||
Sbjct 447177 GATACCATCGACAACGTGAAGGCTAAAATTCAAGATAAAGAGGGCATCCCACCAGACCAG 447118
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || |||||||| || || |||||||| | |||| || ||| |||||
Sbjct 447117 CAGAGGCTGATTTTCGCTGGAAAGCAACTGGAAGACGGCAGGACTTTGGCCGACTATAAT 447058
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||||||||| |||||| ||| |||||||
Sbjct 447057 ATTCAAAAAGAGTCGACTTCGCATTTGGTACT 447026
>seq14
Length=2855554
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| || ||||| || |||||||| |||||| |||| || ||| ||
Sbjct 998432 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCG 998491
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | || | || || || ||| | || || || || | || ||||||||
Sbjct 998492 GATACCATTGACAATGTAAAGGCAAAGA-TCCAAGATAAAGAGGGAATTCCTCCCGACCA 998550
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | || || |||||||| || || | || || | || | |||||| ||
Sbjct 998551 GCAAAGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAA 998610
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|| || || ||||| |||||||||||||| ||||||||
Sbjct 998611 TATCCAGAAGGAATCTACTCTTCATCTGGTGCTTAGACT 998649
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || || || |||| |||||||| |||||| | || || || ||
Sbjct 998888 ATGCAGATTTTTGTTAAAACCTTGACTGGCAAAACAATCACCTTGGAGGTCGAGAGCTCT 998947
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || ||| | || || ||||| ||| | || || |||||
Sbjct 998948 GATACAATCGATAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 999007
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || ||||| || || | |||||| || |||| || |||||||||
Sbjct 999008 CAGAGGTTGATCTTTGCTGGTAAGCAACTCGAAGACGGTAGGACTCTGGCAGATTATAAC 999067
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || |||||||| || || ||||| ||
Sbjct 999068 ATCCAGAAGGAATCGACACTGCACCTGGTGCT 999099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445760538171840
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