Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq6 167 3e-36
seq5 102 1e-16
seq52 96.9 4e-15
>seq6
Length=5093711
Score = 167 bits (184), Expect = 3e-36
Identities = 409/615 (67%), Gaps = 10/615 (2%)
Strand=Plus/Minus
Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633
||| ||| || ||||||||||||||||| || ||||||| || |||||||| || |
Sbjct 4852241 ACAGCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGA 4852182
Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693
| || | ||| ||||| ||||| || || || ||||| ||||||| ||| ||| |
Sbjct 4852181 ATGTCAATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGGCGCAGAAACTTCCCG 4852122
Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGC 33750
| ||||| || ||||| || || ||| |||| || | |||| || | || ||| ||
Sbjct 4852121 AGAAGAAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAGC 4852062
Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810
||| ||||| ||| | ||||| ||||| ||||| || ||||| | || || |
Sbjct 4852061 CGTC---GATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGA 4852005
Query 33811 TGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAG 33868
|||| | || | ||| || || ||| || || | || || |||| ||| |
Sbjct 4852004 TGGCGTGGAACAACCTGTTCTTCTC--GACTGAGTCCTTGATGTAGGTTTCGAGCAACAA 4851947
Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928
||| ||||| || || |||||||| ||||| || || || || || ||||| ||||||
Sbjct 4851946 ACTGTACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAGC 4851887
Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988
||| | || ||| || || | || || | || | ||| || || || |||||
Sbjct 4851886 CTCCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCATC 4851827
Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048
||| || || || |||| || || || |||| |||||||| | || ||
Sbjct 4851826 GGAGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTGAGGCC 4851767
Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108
| ||||| || || | || | || || || || | ||||| || || |||
Sbjct 4851766 TTCCCAATGGCGGAGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAGGCCAT 4851707
Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168
|| || || ||||| | ||| || | | |||| | |||||||| || |||||||
Sbjct 4851706 GGCTTTCTTGTACATTTCCCATATCTGAGGATACTCAATTGGGAACATGCAGAATCTATC 4851647
Query 34169 TGGATTTGGTGCAAG 34183
|| || || || ||
Sbjct 4851646 GGGGTTAGGAGCGAG 4851632
>seq5
Length=5307744
Score = 102 bits (112), Expect = 1e-16
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
||||| | || || | ||| ||||| || || |||||||| || ||| | ||| ||
Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 4279774
Query 63723 -TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780
|| || | ||||| || || ||||| | ||| ||||| || || || || | |||||
Sbjct 4279775 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTA 4279833
Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840
|||||| |||||||| || |||| || | | ||||| | ||| || ||||||
Sbjct 4279834 GCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCA 4279893
Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|||||| ||||||||||||| || ||||||||| || || || ||
Sbjct 4279894 GAGTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942
>seq52
Length=1204374
Score = 96.9 bits (106), Expect = 4e-15
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
||||| | || || | ||| ||||| || || |||||||| || ||| | ||| ||
Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 503409
Query 63723 -TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780
|| || | ||||| || || ||||| | ||| ||||| || || || || | ||| |
Sbjct 503410 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATAA 503468
Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840
|||||||||||| || || || | || | | ||||| | ||| || ||||||
Sbjct 503469 GCATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCA 503528
Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|||||| ||||||||||||| ||| |||||| || || || |||||
Sbjct 503529 GAGTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629809317898560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |