Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq52 82.4 7e-11 >seq52 Length=1204374 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 ||||| || | || ||||| | | || | ||| | | | | |||||| || || ||| Sbjct 502996 CCTCCTTGGTCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCA 503055 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 ||||| | |||||| | || || ||| | ||| |||| || ||||| || || Sbjct 503056 TTAGAGGTTCCGTTTGTTCCACGGATGTAACTGCCCATAGCACGAATATTGTGGATAGAA 503115 Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATTGTTTTAACGTATCAAATAT 38351 | || || ||||| || || |||| | ||| ||| || | ||||| |||||| |||| Sbjct 503116 ACACCAATGCCACCAGC-TGATTTGCTGATAACAGCACACTCCTTTAAGGTATCATATAT 503174 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 |||||||||||| || || || || || | |||||||| Sbjct 503175 ACCTTCTATACTATCGTCTTTCATGCATACAAGGAAACAACT 503216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468518638898880