Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq124 107 2e-18 seq4 95.1 1e-14 seq21 91.5 1e-13 seq14 82.4 8e-11 >seq124 Length=632428 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | || ||||| | ||| ||||||||||| ||||| |||||| | Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||||||| || ||||| |||| || | ||||| || || || Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | |||| | || | || || | || || Sbjct 447815 ATTCCTTCCTTGTC-CTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAAC 447873 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || |||||||| | ||||| || ||||| ||||| Sbjct 447874 CTCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||| |||| || ||||| ||||||||||| |||||| Sbjct 447239 CCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCA 447298 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| ||||| || || || | || || | |||||| || ||||| Sbjct 447299 AGAGTCCGTCCA-TCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGG 447357 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | || | ||| | | || | |||||||| | || | Sbjct 447358 GATACCTTCCTTGTC-TTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAA 447416 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || || | |||||| ||||| |||||||| Sbjct 447417 CCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465 >seq4 Length=5448771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || || | ||| | ||| ||||| || || ||||| |||||| | || | ||| Sbjct 199562 AACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCC 199621 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || ||||| ||||||||| |||| ||||| ||||| || || ||||| || || ||||| Sbjct 199622 TCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCC 199681 Query 139673 GTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | |||| || | | || | || |||| | ||| ||||| | || | || Sbjct 199682 -TGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGT 199740 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| || ||||||||||| || || || |||||| Sbjct 199741 CTTCCCCGTCAACGTTTTCACAAAGATCTGCATA 199774 >seq21 Length=2013095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||| || || |||||||| ||| || || || ||| || Sbjct 1809664 ACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCC 1809605 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || ||||||| | ||||| || || || || || |||||||| | Sbjct 1809604 AGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGG 1809545 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || |||| | || | ||||| | ||| ||||| | ||| | || || Sbjct 1809544 ATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTC 1809485 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||| || ||||| || |||||| Sbjct 1809484 CCGGTCAACGTCTTGACGAAAATCTGCATA 1809455 >seq14 Length=2855554 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||||||||| || || || ||||||||| || |||||| Sbjct 999084 GTCGATTCCTTCTGGATGTTATAATCTGCCAGAGTCCTACCGTCTTCGAGTTGCTTACCA 999025 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | || || || || || ||||| || || || ||| || ||| Sbjct 999024 GCAAAGATCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTGGATCTTGGCTTTC 998965 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||| || | | ||| ||||| | ||| | || ||||| ||||| ||| Sbjct 998964 ACATTATCGATTGTATCAGAGCTCTCGACCTCCAAGGTGATTGTTTTGCCAGTCAAGGTT 998905 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 998904 TTAACAAAAATCTGCATA 998887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057476758400