Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq6 158 2e-33
seq52 114 2e-20
seq5 111 2e-19
>seq6
Length=5093711
Score = 158 bits (174), Expect = 2e-33
Identities = 409/616 (66%), Gaps = 12/616 (2%)
Strand=Plus/Minus
Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011
||| ||| || ||||||||||||||||| || ||||||| || | |||||| || |
Sbjct 4852241 ACAGCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGA 4852182
Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070
| || | ||| ||||| ||||| || || || ||||| ||||||| |||| || ||
Sbjct 4852181 ATGTCAATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGG-CGCAGAAACTTCCC 4852123
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACT-GGCG 50127
|| ||||| || ||||| || || ||| ||| || | |||| || | ||| || |
Sbjct 4852122 GAGAAGAAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAG 4852063
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
| ||| ||||| ||| | ||||| ||||| ||||| || ||||| | || ||
Sbjct 4852062 CCGTC---GATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCG 4852006
Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAA 50245
||||| | || | ||| || || ||| || || | || || |||| ||| |
Sbjct 4852005 ATGGCGTGGAACAACCTGTTCTTCTC--GACTGAGTCCTTGATGTAGGTTTCGAGCAACA 4851948
Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305
||| ||||| || || |||||||| ||||| || || || || || ||||| |||||
Sbjct 4851947 AACTGTACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAG 4851888
Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365
|||| | || ||| || || | || || | || | ||| || || || || |
Sbjct 4851887 CCTCCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCAT 4851828
Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425
| ||| || || || |||| || || || ||||| ||||||| || || ||
Sbjct 4851827 CGGAGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTGAGGC 4851768
Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485
| ||||| || || | || | || || || || | ||||| || || |||
Sbjct 4851767 CTTCCCAATGGCGGAGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAGGCCA 4851708
Query 50486 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545
|| || || ||||| | ||| || | | |||| | |||||||| || |||||||
Sbjct 4851707 TGGCTTTCTTGTACATTTCCCATATCTGAGGATACTCAATTGGGAACATGCAGAATCTAT 4851648
Query 50546 TTGGATTTGGTGCAAG 50561
|| || || || ||
Sbjct 4851647 CGGGGTTAGGAGCGAG 4851632
>seq52
Length=1204374
Score = 114 bits (126), Expect = 2e-20
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
||||| | || || | ||| ||||| || || |||||||| || ||||| ||| ||
Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 503409
Query 80395 -TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452
|| || | ||||| ||||| ||||| | ||| ||||| || || || || | ||| |
Sbjct 503410 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATAA 503468
Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512
|||||||||||| || || |||| ||| | | ||||| | ||| || ||||||
Sbjct 503469 GCATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCA 503528
Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
|||||| ||||||||||||| ||| |||||| || || || |||||
Sbjct 503529 GAGTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577
>seq5
Length=5307744
Score = 111 bits (122), Expect = 2e-19
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
||||| | || || | ||| ||||| || || |||||||| || ||||| ||| ||
Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 4279774
Query 80395 -TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452
|| || | ||||| ||||| ||||| | ||| ||||| || || || || | |||||
Sbjct 4279775 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTA 4279833
Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512
|||||| |||||||| || || | ||| | | ||||| | ||| || ||||||
Sbjct 4279834 GCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCA 4279893
Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
|||||| ||||||||||||| || ||||||||| || || || ||
Sbjct 4279894 GAGTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718259354765280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |