Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 158 2e-33 seq52 114 2e-20 seq5 111 2e-19 >seq6 Length=5093711 Score = 158 bits (174), Expect = 2e-33 Identities = 409/616 (66%), Gaps = 12/616 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || ||||||||||||||||| || ||||||| || | |||||| || | Sbjct 4852241 ACAGCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGA 4852182 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || | ||| ||||| ||||| || || || ||||| ||||||| |||| || || Sbjct 4852181 ATGTCAATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGG-CGCAGAAACTTCCC 4852123 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACT-GGCG 50127 || ||||| || ||||| || || ||| ||| || | |||| || | ||| || | Sbjct 4852122 GAGAAGAAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAG 4852063 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| ||| | ||||| ||||| ||||| || ||||| | || || Sbjct 4852062 CCGTC---GATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCG 4852006 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAA 50245 ||||| | || | ||| || || ||| || || | || || |||| ||| | Sbjct 4852005 ATGGCGTGGAACAACCTGTTCTTCTC--GACTGAGTCCTTGATGTAGGTTTCGAGCAACA 4851948 Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305 ||| ||||| || || |||||||| ||||| || || || || || ||||| ||||| Sbjct 4851947 AACTGTACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAG 4851888 Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 |||| | || ||| || || | || || | || | ||| || || || || | Sbjct 4851887 CCTCCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCAT 4851828 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425 | ||| || || || |||| || || || ||||| ||||||| || || || Sbjct 4851827 CGGAGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTGAGGC 4851768 Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | ||||| || || | || | || || || || | ||||| || || ||| Sbjct 4851767 CTTCCCAATGGCGGAGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAGGCCA 4851708 Query 50486 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545 || || || ||||| | ||| || | | |||| | |||||||| || ||||||| Sbjct 4851707 TGGCTTTCTTGTACATTTCCCATATCTGAGGATACTCAATTGGGAACATGCAGAATCTAT 4851648 Query 50546 TTGGATTTGGTGCAAG 50561 || || || || || Sbjct 4851647 CGGGGTTAGGAGCGAG 4851632 >seq52 Length=1204374 Score = 114 bits (126), Expect = 2e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | || || | ||| ||||| || || |||||||| || ||||| ||| || Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 503409 Query 80395 -TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 || || | ||||| ||||| ||||| | ||| ||||| || || || || | ||| | Sbjct 503410 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATAA 503468 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||||| || || |||| ||| | | ||||| | ||| || |||||| Sbjct 503469 GCATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCA 503528 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| ||||||||||||| ||| |||||| || || || ||||| Sbjct 503529 GAGTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577 >seq5 Length=5307744 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | || || | ||| ||||| || || |||||||| || ||||| ||| || Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 4279774 Query 80395 -TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 || || | ||||| ||||| ||||| | ||| ||||| || || || || | ||||| Sbjct 4279775 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTA 4279833 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||| |||||||| || || | ||| | | ||||| | ||| || |||||| Sbjct 4279834 GCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCA 4279893 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| ||||||||||||| || ||||||||| || || || || Sbjct 4279894 GAGTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718259354765280