Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq11 100 3e-16 seq6 96.9 3e-15 >seq11 Length=3405507 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| ||||||||||||||||| ||| ||||| ||||| || |||| | Sbjct 2720238 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTGGAAATTAGTTCATTTGAGAAGGTTAGT 2720179 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 13757 || ||||||||||| || ||||| | ||||||||| || Sbjct 2720178 CCCGGCATCAATCCCCGCTTTTTCAGCCAAAATATGGC 2720141 >seq6 Length=5093711 Score = 96.9 bits (106), Expect = 3e-15 Identities = 240/359 (67%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || ||||| ||||| || || ||||| || |||| || | ||||||||| ||||| Sbjct 4852236 AAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTC 4852177 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||||||||| | |||||||| || | ||| ||||| || ||| ||| || ||| Sbjct 4852176 AATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGGCGCAGAAACTTCCCGAGAAG 4852117 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || || || || || || | || || || ||| ||||||| | || Sbjct 4852116 AAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAGCCGT-- 4852059 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 ||||||||| ||||| || | ||| || | || | || ||||| || Sbjct 4852058 -CGATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGCG 4852000 Query 13897 TTGAATAA-ATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953 | ||| || |||| |||||| | ||| |||| ||||| || || | | || || Sbjct 4851999 TGGAACAACCTGTT-CTTCTCGACTGAGTCCTTG--ATGTAGGTTTCGAGCAACAAACTG 4851943 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 ||||| || ||||| ||||| || || || || || || ||||| || |||||| || Sbjct 4851942 TACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAGCCTC 4851884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478582506557280