Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq11 100 3e-16
seq6 96.9 3e-15
>seq11
Length=3405507
Score = 100 bits (110), Expect = 3e-16
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|| ||||| ||||| ||||||||||||||||| ||| ||||| ||||| || |||| |
Sbjct 2720238 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTGGAAATTAGTTCATTTGAGAAGGTTAGT 2720179
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 13757
|| ||||||||||| || ||||| | ||||||||| ||
Sbjct 2720178 CCCGGCATCAATCCCCGCTTTTTCAGCCAAAATATGGC 2720141
>seq6
Length=5093711
Score = 96.9 bits (106), Expect = 3e-15
Identities = 240/359 (67%), Gaps = 9/359 (3%)
Strand=Plus/Minus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| ||||| ||||| || || ||||| || |||| || | ||||||||| |||||
Sbjct 4852236 AAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTC 4852177
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||||||||| | |||||||| || | ||| ||||| || ||| ||| || |||
Sbjct 4852176 AATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGGCGCAGAAACTTCCCGAGAAG 4852117
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836
|| || || || || || || | || || || ||| ||||||| | ||
Sbjct 4852116 AAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAGCCGT-- 4852059
Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896
||||||||| ||||| || | ||| || | || | || ||||| ||
Sbjct 4852058 -CGATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGATGGCG 4852000
Query 13897 TTGAATAA-ATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953
| ||| || |||| |||||| | ||| |||| ||||| || || | | || ||
Sbjct 4851999 TGGAACAACCTGTT-CTTCTCGACTGAGTCCTTG--ATGTAGGTTTCGAGCAACAAACTG 4851943
Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012
||||| || ||||| ||||| || || || || || || ||||| || |||||| ||
Sbjct 4851942 TACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAGCCTC 4851884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478582506557280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |