Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 149 8e-31 seq52 105 9e-18 seq5 102 1e-16 >seq6 Length=5093711 Score = 149 bits (164), Expect = 8e-31 Identities = 407/616 (66%), Gaps = 12/616 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || ||||||||||||||||| || || |||| || |||||||| || | Sbjct 4852241 ACAGCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGA 4852182 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || | ||| ||||| ||||| || || || ||||| ||||| | |||| || ||| Sbjct 4852181 ATGTCAATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATAT-GGCGCAGAAACTTCCC 4852123 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCA 42232 || ||||| || ||||| || || ||| |||| || | |||| || | || ||| Sbjct 4852122 GAGAAGAAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAG 4852063 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| ||| | ||||| ||||| ||||| || ||||| | || || Sbjct 4852062 CCGTC---GATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCG 4852006 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCGATCAAAA 42350 ||||| | || | ||| || || ||| || || | || || |||| ||| | Sbjct 4852005 ATGGCGTGGAACAACCTGTTCTTCTC--GACTGAGTCCTTGATGTAGGTTTCGAGCAACA 4851948 Query 42351 GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGG 42410 ||| ||||| || || |||||||| ||||| || || || || || ||||| ||| | Sbjct 4851947 AACTGTACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAG 4851888 Query 42411 CCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470 |||| | |||||| || || | || || | || | ||| || || || || | Sbjct 4851887 CCTCCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCAT 4851828 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 | ||| || || || |||| || || || |||| |||||||| | || | Sbjct 4851827 CGGAGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTGAGGC 4851768 Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 | ||||| || || | || | || || || || | ||||| || || || Sbjct 4851767 CTTCCCAATGGCGGAGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAGGCCA 4851708 Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT 42650 || || || ||||| | ||| || | | |||| | ||||||||| || ||||||| Sbjct 4851707 TGGCTTTCTTGTACATTTCCCATATCTGAGGATACTCAATTGGGAACATGCAGAATCTAT 4851648 Query 42651 TTGGATTTGGTGCAAG 42666 || || || || || Sbjct 4851647 CGGGGTTAGGAGCGAG 4851632 >seq52 Length=1204374 Score = 105 bits (116), Expect = 9e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| | || || | ||| ||||| || || |||||||| || ||||| ||| || Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 503409 Query 72478 -TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 || || | ||||| ||||| ||||| | ||| || || || || || || | ||| | Sbjct 503410 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATAA 503468 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| |||||||| || || |||| ||| | | ||||| | ||| || |||||| Sbjct 503469 GCATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCA 503528 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||| ||||||||||||| ||| |||||| || || || ||||| Sbjct 503529 GAGTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577 >seq5 Length=5307744 Score = 102 bits (112), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| | || || | ||| ||||| || || |||||||| || ||||| ||| || Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 4279774 Query 72478 -TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 || || | ||||| ||||| ||||| | ||| || || || || || || | ||||| Sbjct 4279775 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTA 4279833 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| || |||||||| || || | ||| | | ||||| | ||| || |||||| Sbjct 4279834 GCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCA 4279893 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||| ||||||||||||| || ||||||||| || || || || Sbjct 4279894 GAGTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130374519520