Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 125 1e-23 >seq6 Length=5093711 Score = 125 bits (138), Expect = 1e-23 Identities = 395/596 (66%), Gaps = 22/596 (4%) Strand=Plus/Plus Query 124985 TAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCA 125044 |||||| | |||| || || ||||| | | || |||||||||||||| || || Sbjct 4851649 TAGATTCTGCATGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAAAGCCAT 4851708 Query 125045 GGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA--G 125102 |||||| || ||||| | || |||||||| || || ||||||| | ||||||| | Sbjct 4851709 GGCCTCGTTCTGGACCGCTGAGGAGGTCGACCTCTCACAGGACCTCCGCCATTGGGAAGG 4851768 Query 125103 ACT--CGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCG 125160 || || ||| |||| ||| | || || || ||| || |||||||||| |||| Sbjct 4851769 CCTCACGGCCGAC-GAAA---AGC---ATTTCATCTCCCACGTTCTGGCCTTCTTCGCCG 4851821 Query 125161 GCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATT 125219 ||||||||| ||||| || ||||| | | | || ||| | ||| | || Sbjct 4851822 CCTCCGATGGTATCGTTCTGGAGAATCTCGCCGGC-CGGTTCATGAAGGAGGTTCAGGTT 4851880 Query 125220 CCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAAT 125278 | |||| | | || || || || ||||||||| ||||||||| | ||||| || || Sbjct 4851881 GCGGAGG-CTAGAGCGTTCTATGGCTTCCAAATCGCAATTGAGAACATTCACTCCGAGAT 4851939 Query 125279 GTACTCTACACTGATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTA 125337 |||| | || | || | ||||| || || | | || ||| | | || Sbjct 4851940 GTACAGTTTGTTGCTCGAAACCTACATCAAGGACTCAGTCGAG-AAGAACAGGTTGTTCC 4851998 Query 125338 ACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG 125397 |||| ||||| || || || | | || || || | |||| | | ||||||| Sbjct 4851999 ACGCCATCGAGACTGTACCTTGCGTCGCGAAGAAAGCCGAGTGGGCGCTAAAATGGATCG 4852058 Query 125398 ATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCT 125457 | | | | || |||| || || | ||| | | ||||| || || || || | Sbjct 4852059 ACGGCTCCGAG---TCGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTT 4852115 Query 125458 TCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGA 125516 |||| ||||| ||||| ||| ||||| || ||||| ||||| || || || ||||| ||| Sbjct 4852116 TCTTCTCGGGAAGTTTCTGC-GCCATATTCTGGCTGAAGAAACGAGGCCTTATGCCAGGA 4852174 Query 125517 CTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||| | ||||| || || || |||||||| ||||| ||||| || || || Sbjct 4852175 TTGACATTCTCAAACGAATTGATCTCCCGAGACGAAGGCCTGCACTGCGATTTCGC 4852230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049455071520