Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq124 134 1e-26
seq14 116 3e-21
seq4 95.1 9e-15
seq21 86.0 5e-12
>seq124
Length=632428
Score = 134 bits (148), Expect = 1e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || || ||||| ||||||||||||||||||||| || ||| |||||||
Sbjct 447713 ACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTCG 447772
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || |||||| | || | | || ||||| |||||||||||| ||||| |
Sbjct 447773 AGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGA 447832
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| ||||||| | || || ||||| | |||| || || | |||||| |||||
Sbjct 447833 ATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTTTTG 447892
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAA 15376
|| || |||||||| ||||| || ||||| | | | ||| ||
Sbjct 447893 CCGGTGAGAGTTTTCACAAATATCTGCATCTGTCAGAATCAA 447934
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|||| |||||| || || || ||||| |||||||||||| ||| | | | |||||
Sbjct 447257 ACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCA 447316
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||| ||| | || | | ||| ||||| || || ||||| ||||| |
Sbjct 447317 AGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 447376
Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| || ||| || ||| | || || || ||| |||| || || || || || || ||
Sbjct 447377 ATCTTAGCT-TTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTT 447435
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| || |||||||||||
Sbjct 447436 TCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465
>seq14
Length=2855554
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | ||||| | || ||||| || || || || ||||| ||||||||||| |
Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | |||| | ||||| | ||| ||||| ||| | ||||| | |||||||| |||
Sbjct 999510 AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGG 999451
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| || || ||||| ||| ||||| ||| ||| | || ||||||||| | || ||
Sbjct 999450 ATGCCCTCCTTGTCTTGAATCTTTGC-CTTCACATTATCAATGGTATCGGAGCTCTCCAC 999392
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || || || |||| ||||| |||||||| |||||
Sbjct 999391 TTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||| ||| | | || || || || || || || || ||||||||||||||
Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | || | ||||||| ||| || ||||| | |||| | |||||||| |||
Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || || ||||| || ||| || ||| | || |||||||| | || ||
Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACT 999163
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || || ||||||| || || |||||||| |||||
Sbjct 999162 TCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| ||||| || ||||| || ||||||||||| | | ||| | | || || | ||||
Sbjct 999774 TGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGT 999715
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279
|| ||||| | ||||| | ||||| || ||||| || || ||||| ||| |||
Sbjct 999714 TTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTT 999655
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
|| ||| || | || || || || |||| || || || || || || || |||||
Sbjct 999654 GC-CTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTTCCCTGT 999596
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
||| || || ||||| || |||||
Sbjct 999595 CAGTGTCTTCACAAAGATCTGCAT 999572
>seq4
Length=5448771
Score = 95.1 bits (104), Expect = 9e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208
||||| || | || || ||||| || || || |||||||||||| ||| ||| ||
Sbjct 199559 CTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCG 199618
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
|| || | || || ||||| | || | ||| || ||||| || ||||| || |||
Sbjct 199619 TCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTG 199678
Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| ||| ||||| ||| ||| | || ||||||||| | || || || | || ||
Sbjct 199679 TCCTGAATCTTTGC-CTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTAT 199737
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
||| || || |||| ||||| ||||| || ||||||||
Sbjct 199738 GGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCATATT 199776
>seq21
Length=2013095
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || | ||| || || || || ||||| || ||| ||| | || |||| ||
Sbjct 1809664 ACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCC 1809605
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || || ||| | |||| | || ||||| ||| ||||| ||||||||
Sbjct 1809604 AGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGG 1809545
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||||||| | |||||||| || | | || || || | ||||||||||||
Sbjct 1809544 ATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTC 1809485
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| || || || ||||| ||||||
Sbjct 1809484 CCGGTCAACGTCTTGACGAAAATCTGCATA 1809455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362174556409932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |