Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq124 91.5 1e-13 seq21 91.5 1e-13 >seq124 Length=632428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||| ||||||||||| || || |||| || || |||| ||| Sbjct 447029 ACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCC 447088 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || || || || |||| || |||||||| || || | ||||||||| || | Sbjct 447089 AGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGA 447148 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | ||| ||||| | ||| || | || || ||||| Sbjct 447149 ATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTT 447208 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||||| || || |||||||| |||||| Sbjct 447209 CCCGTTAAGGTCTTCACAAAAATCTGCATT 447238 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || || ||||| ||||||||||| || |||| || | | || || Sbjct 447484 CACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCTTC 447543 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||||||||||| |||| || |||||||| ||| || | |||||||| || Sbjct 447544 GAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCTTG 447603 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 || || || || | | ||| |||| ||| || ||| || | ||| ||||| Sbjct 447604 GATCTTGGCCTTCACATTGTCGATGGTAT---CAGAGCTTTCCACCTCCAAGGTGATGGT 447660 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | ||||| || || |||||||| Sbjct 447661 TTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 >seq21 Length=2013095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| ||||||||||| || || || || || |||| || | ||||||| Sbjct 1809665 CACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTC 1809606 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || |||||||| || || | ||||||||||| Sbjct 1809605 CAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTG 1809546 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||||| | | | | || || | ||| || | |||||||||||| Sbjct 1809545 GATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTT 1809486 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || ||||| ||||| ||||| Sbjct 1809485 CCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| |||||||||||||| || | || | | ||||||||||| || || Sbjct 1809880 GTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCT 1809821 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| || || ||||||||| || | ||||| ||||| |||||| ||| Sbjct 1809820 GCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTTGGCTTTC 1809761 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | || ||| |||| || | || ||||| || || || || ||| Sbjct 1809760 ACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTT 1809701 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| |||||||| Sbjct 1809700 TTCACAAAGATTTGCAT 1809684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414567484658488