Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq124 91.5 1e-13
seq21 91.5 1e-13
>seq124
Length=632428
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | || ||||| ||||||||||| || || |||| || || |||| |||
Sbjct 447029 ACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCC 447088
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|| || || || || |||| || |||||||| || || | ||||||||| || |
Sbjct 447089 AGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGA 447148
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
||||| || || | | ||| ||||| | ||| || | || || |||||
Sbjct 447149 ATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTT 447208
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| ||||| || || |||||||| ||||||
Sbjct 447209 CCCGTTAAGGTCTTCACAAAAATCTGCATT 447238
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||||| || || ||||| ||||||||||| || |||| || | | || ||
Sbjct 447484 CACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCTTC 447543
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|| ||||||||||| |||| || |||||||| ||| || | |||||||| ||
Sbjct 447544 GAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCTTG 447603
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008
|| || || || | | ||| |||| ||| || ||| || | ||| |||||
Sbjct 447604 GATCTTGGCCTTCACATTGTCGATGGTAT---CAGAGCTTTCCACCTCCAAGGTGATGGT 447660
Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| || || | ||||| || || ||||||||
Sbjct 447661 TTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693
>seq21
Length=2013095
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| |||||| ||||||||||| || || || || || |||| || | |||||||
Sbjct 1809665 CACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTC 1809606
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||| || || || | || || |||||||| || || | |||||||||||
Sbjct 1809605 CAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTG 1809546
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || ||||| | | | | || || | ||| || | ||||||||||||
Sbjct 1809545 GATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTT 1809486
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || || || ||||| ||||| |||||
Sbjct 1809485 CCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| |||||||| |||||||||||||| || | || | | ||||||||||| || ||
Sbjct 1809880 GTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCT 1809821
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| |||| || || ||||||||| || | ||||| ||||| |||||| |||
Sbjct 1809820 GCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTTGGCTTTC 1809761
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | | || ||| |||| || | || ||||| || || || || |||
Sbjct 1809760 ACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTT 1809701
Query 19025 TTGACAAAAATTTGCAT 19041
|| ||||| ||||||||
Sbjct 1809700 TTCACAAAGATTTGCAT 1809684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414567484658488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |