Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq124 86.0 4e-12 >seq124 Length=632428 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||||||||||||||| ||| || | | || |||| ||| ||||| || || Sbjct 447046 CTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTTCCAGCGAA 447105 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| || |||||||| | || | || ||||||||| |||||| || || | Sbjct 447106 AATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTTCACGTT 447165 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | ||||| | ||| || || | || |||||||| || ||||| |||||||| Sbjct 447166 GTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGTCTTCAC 447225 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 447226 AAAAATCTGCAT 447237 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || |||||| ||||||||| || || |||||| | || | || || Sbjct 447712 CACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTC 447771 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || ||||| || || || | || ||||||||| | || | ||||| || || Sbjct 447772 GAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTG 447831 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || | ||| |||||| | || || || | ||||||||||| Sbjct 447832 AATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTTTT 447891 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||| ||||||||||| ||||| Sbjct 447892 GCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354773051307696