Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq8 120 2e-22
seq72 116 2e-21
seq49 116 2e-21
seq1 114 7e-21
seq80 113 2e-20
seq33 113 2e-20
seq3 111 8e-20
seq127 109 3e-19
seq29 109 3e-19
seq55 107 1e-18
seq5 107 1e-18
seq155 102 4e-17
seq34 95.1 6e-15
seq140 82.4 4e-11
>seq8
Length=4047118
Score = 120 bits (132), Expect = 2e-22
Identities = 82/93 (88%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||| | || | |||||||||||||| | | |||||||| |||||||||||||||||
Sbjct 2988774 AATTAAAACAATAACAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 2988833
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||| ||||
Sbjct 2988834 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 2988866
Score = 109 bits (120), Expect = 3e-19
Identities = 82/96 (85%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
||||| ||||| ||| || ||||||||| | | |||||||| ||||||||||||||
Sbjct 2979385 TAGAA--AATAACAAAAAAATATGGCCCATGCAGGTGTCGAACCTGCGACCTTCGCGTTA 2979442
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||||||||||||||| ||||
Sbjct 2979443 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 2979478
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2963534 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2963475
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 2963474 CAACTGAGCTAATAGGCC 2963457
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 3192839 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3192780
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 3192779 CAACTGAGCTAATAGGCC 3192762
Score = 86.0 bits (94), Expect = 3e-12
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 2986406 TCAAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAACTGAGCTAATAGGCC 2986464
>seq72
Length=1061713
Score = 116 bits (128), Expect = 2e-21
Identities = 80/90 (89%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 11441 AATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
|||||||| || | ||||||||||| | | |||||||| ||||||||||||||||||||
Sbjct 375003 AATAAAAACATAATATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 375062
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||| ||||
Sbjct 375063 CGACGCTCTAACCAACTGAGCTAATAGGCC 375092
>seq49
Length=1248075
Score = 116 bits (128), Expect = 2e-21
Identities = 87/101 (86%), Gaps = 5/101 (5%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||||||| ||||| ||||||| |||||||||| | | |||||||| |||||||||
Sbjct 139688 AAATATAAAATTAC-AAAAAAT----TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 139634
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||| ||||||||||||||| ||||
Sbjct 139633 CGTTATTAGCACGACGCTCTGACCAACTGAGCTAATAGGCC 139593
>seq1
Length=7185522
Score = 114 bits (126), Expect = 7e-21
Identities = 77/87 (89%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 4072360 AAAAAAAAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 4072301
Query 11501 GACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||| ||||||||||||||| ||
Sbjct 4072300 GACGCTCTAACCAACTGAGCTAATAGG 4072274
Score = 109 bits (120), Expect = 3e-19
Identities = 85/102 (83%), Gaps = 9/102 (9%)
Strand=Plus/Minus
Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
||||||| ||||||||||| ||||||||| | | |||||||| ||||||||
Sbjct 4075498 GAAATAT----TTAATAAAAAAA-----TGGCCCATGCAGGTCTCGAACCTGCGACCTTC 4075448
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 4075447 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 4075406
>seq80
Length=965204
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||| | ||| ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 449534 AATAAAAGAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 449475
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||| ||||
Sbjct 449474 GACGCTCTAACCAACTGAGCTAATAGGCC 449446
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 456940 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 456881
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 456880 TGAGCTAATAGGCC 456867
Score = 104 bits (114), Expect = 1e-17
Identities = 86/103 (83%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 11429 AAATATAGAA-TTAATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486
||| ||| || |||| |||| | | || ||||||||| | | | |||||| |||||||
Sbjct 478739 AAAAATAAAAGTTAAAAAAAGAAAAGAAATGGCCCATGCAGGTCTTGAACCTGCGACCTT 478680
Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 478679 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 478637
>seq33
Length=1525751
Score = 113 bits (124), Expect = 2e-20
Identities = 79/91 (87%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||| || ||| ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 1353857 AAAAAATAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1353916
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531
|||||||| ||||||||||||||| ||||||
Sbjct 1353917 GACGCTCTAACCAACTGAGCTAATAGGCCGT 1353947
>seq3
Length=6378990
Score = 111 bits (122), Expect = 8e-20
Identities = 72/80 (90%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 6140099 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6140158
Query 11515 CTGAGCTAATGGGCCGTCGA 11534
|||||||||| |||||| ||
Sbjct 6140159 CTGAGCTAATAGGCCGTTGA 6140178
>seq127
Length=615039
Score = 109 bits (120), Expect = 3e-19
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||||
Sbjct 40923 AAAAT-AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 40981
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||| |||||||||| ||||
Sbjct 40982 TCTAACCAGCTGAGCTAATAGGCC 41005
Score = 96.9 bits (106), Expect = 2e-15
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||| ||| || | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 40169 TTGCCCCTTGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 40228
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 40229 CTGAGCTAATAGGCC 40243
>seq29
Length=1578684
Score = 109 bits (120), Expect = 3e-19
Identities = 79/92 (86%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
||| | ||| ||| | | ||||||||| | | |||||||| ||||||||||||||||||
Sbjct 1022823 ATTTAAAAATAATAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 1022882
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||| ||||||||||||||| ||||
Sbjct 1022883 CACGACGCTCTAACCAACTGAGCTAATAGGCC 1022914
Score = 102 bits (112), Expect = 4e-17
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||| ||| ||| |||||||| |||| |||||||||||||||||||||||| ||
Sbjct 388120 AAATTGGCCTATGCAAGTTTCGAACCTGCGACTTTCGCGTTATTAGCACGACGCTCTAAC 388179
Query 11512 CAACTGAGCTAAT 11524
|||||||||||||
Sbjct 388180 CAACTGAGCTAAT 388192
Score = 100 bits (110), Expect = 1e-16
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 11446 AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 1032117 AAAATGAAAAGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1032176
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||| | ||||||||||||||| ||||
Sbjct 1032177 GCTATAACCAACTGAGCTAATAGGCC 1032202
>seq55
Length=1179671
Score = 107 bits (118), Expect = 1e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 159093 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 159152
Query 11512 CAACTGAGCTAAT 11524
|||||||||||||
Sbjct 159153 CAACTGAGCTAAT 159165
>seq5
Length=5307744
Score = 107 bits (118), Expect = 1e-18
Identities = 75/86 (87%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||| | | || |||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 4336379 AAATACTAAATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 4336320
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||| ||||
Sbjct 4336319 GCTCTAACCAACTGAGCTAATAGGCC 4336294
>seq155
Length=533582
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 500898 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 500957
Query 11512 CAACTGAGCTAATGGGCC 11529
||||| ||||||| ||||
Sbjct 500958 CAACTAAGCTAATAGGCC 500975
>seq34
Length=1513885
Score = 95.1 bits (104), Expect = 6e-15
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
||||||||||| | | |||||||| ||||| ||||| ||||||||||||||||| | ||
Sbjct 808791 ATTGGCCCATGCAGGTCTCGAACCTGCGACCCTCGCGATATTAGCACGACGCTCTGAGCA 808850
Query 11514 ACTGAGCTAATGGGCCGTC 11532
||||||||||| |||| ||
Sbjct 808851 ACTGAGCTAATAGGCCATC 808869
>seq140
Length=583600
Score = 82.4 bits (90), Expect = 4e-11
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| ||||||| || || ||||||||||||||| ||||||
Sbjct 462213 TGGCCCATACAGGTTTCGAACCTCCGACCTTTGCATTTTTAGCACGACGCTCTAACCAAC 462154
Query 11516 TGAGCTAAT 11524
|||||||||
Sbjct 462153 TGAGCTAAT 462145
Lambda K H
0.638 0.409 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261487847355952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |