Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8 120 2e-22 seq72 116 2e-21 seq49 116 2e-21 seq1 114 7e-21 seq80 113 2e-20 seq33 113 2e-20 seq3 111 8e-20 seq127 109 3e-19 seq29 109 3e-19 seq55 107 1e-18 seq5 107 1e-18 seq155 102 4e-17 seq34 95.1 6e-15 seq140 82.4 4e-11 >seq8 Length=4047118 Score = 120 bits (132), Expect = 2e-22 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| | || | |||||||||||||| | | |||||||| ||||||||||||||||| Sbjct 2988774 AATTAAAACAATAACAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 2988833 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 2988834 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 2988866 Score = 109 bits (120), Expect = 3e-19 Identities = 82/96 (85%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| ||||| ||| || ||||||||| | | |||||||| |||||||||||||| Sbjct 2979385 TAGAA--AATAACAAAAAAATATGGCCCATGCAGGTGTCGAACCTGCGACCTTCGCGTTA 2979442 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 2979443 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 2979478 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2963534 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2963475 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 2963474 CAACTGAGCTAATAGGCC 2963457 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 3192839 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3192780 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 3192779 CAACTGAGCTAATAGGCC 3192762 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||| Sbjct 2986406 TCAAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAACTGAGCTAATAGGCC 2986464 >seq72 Length=1061713 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| || | ||||||||||| | | |||||||| |||||||||||||||||||| Sbjct 375003 AATAAAAACATAATATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 375062 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 375063 CGACGCTCTAACCAACTGAGCTAATAGGCC 375092 >seq49 Length=1248075 Score = 116 bits (128), Expect = 2e-21 Identities = 87/101 (86%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| ||||| ||||||| |||||||||| | | |||||||| ||||||||| Sbjct 139688 AAATATAAAATTAC-AAAAAAT----TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 139634 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 139633 CGTTATTAGCACGACGCTCTGACCAACTGAGCTAATAGGCC 139593 >seq1 Length=7185522 Score = 114 bits (126), Expect = 7e-21 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 4072360 AAAAAAAAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 4072301 Query 11501 GACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||| ||||||||||||||| || Sbjct 4072300 GACGCTCTAACCAACTGAGCTAATAGG 4072274 Score = 109 bits (120), Expect = 3e-19 Identities = 85/102 (83%), Gaps = 9/102 (9%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| ||||||||||| ||||||||| | | |||||||| |||||||| Sbjct 4075498 GAAATAT----TTAATAAAAAAA-----TGGCCCATGCAGGTCTCGAACCTGCGACCTTC 4075448 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 4075447 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 4075406 >seq80 Length=965204 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 449534 AATAAAAGAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 449475 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 449474 GACGCTCTAACCAACTGAGCTAATAGGCC 449446 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 456940 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 456881 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 456880 TGAGCTAATAGGCC 456867 Score = 104 bits (114), Expect = 1e-17 Identities = 86/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11429 AAATATAGAA-TTAATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| ||| || |||| |||| | | || ||||||||| | | | |||||| ||||||| Sbjct 478739 AAAAATAAAAGTTAAAAAAAGAAAAGAAATGGCCCATGCAGGTCTTGAACCTGCGACCTT 478680 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| ||||||||||||||| |||| Sbjct 478679 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 478637 >seq33 Length=1525751 Score = 113 bits (124), Expect = 2e-20 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||| || ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1353857 AAAAAATAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1353916 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| ||||||||||||||| |||||| Sbjct 1353917 GACGCTCTAACCAACTGAGCTAATAGGCCGT 1353947 >seq3 Length=6378990 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 6140099 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6140158 Query 11515 CTGAGCTAATGGGCCGTCGA 11534 |||||||||| |||||| || Sbjct 6140159 CTGAGCTAATAGGCCGTTGA 6140178 >seq127 Length=615039 Score = 109 bits (120), Expect = 3e-19 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||||||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 40923 AAAAT-AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 40981 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 40982 TCTAACCAGCTGAGCTAATAGGCC 41005 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||| ||| || | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 40169 TTGCCCCTTGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 40228 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 40229 CTGAGCTAATAGGCC 40243 >seq29 Length=1578684 Score = 109 bits (120), Expect = 3e-19 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| | ||| ||| | | ||||||||| | | |||||||| |||||||||||||||||| Sbjct 1022823 ATTTAAAAATAATAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 1022882 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||||||||||| |||| Sbjct 1022883 CACGACGCTCTAACCAACTGAGCTAATAGGCC 1022914 Score = 102 bits (112), Expect = 4e-17 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| ||| ||| |||||||| |||| |||||||||||||||||||||||| || Sbjct 388120 AAATTGGCCTATGCAAGTTTCGAACCTGCGACTTTCGCGTTATTAGCACGACGCTCTAAC 388179 Query 11512 CAACTGAGCTAAT 11524 ||||||||||||| Sbjct 388180 CAACTGAGCTAAT 388192 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11446 AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1032117 AAAATGAAAAGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1032176 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||| | ||||||||||||||| |||| Sbjct 1032177 GCTATAACCAACTGAGCTAATAGGCC 1032202 >seq55 Length=1179671 Score = 107 bits (118), Expect = 1e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 159093 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 159152 Query 11512 CAACTGAGCTAAT 11524 ||||||||||||| Sbjct 159153 CAACTGAGCTAAT 159165 >seq5 Length=5307744 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| | | || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 4336379 AAATACTAAATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 4336320 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 4336319 GCTCTAACCAACTGAGCTAATAGGCC 4336294 >seq155 Length=533582 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 500898 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 500957 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||| ||||||| |||| Sbjct 500958 CAACTAAGCTAATAGGCC 500975 >seq34 Length=1513885 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||| ||||| ||||||||||||||||| | || Sbjct 808791 ATTGGCCCATGCAGGTCTCGAACCTGCGACCCTCGCGATATTAGCACGACGCTCTGAGCA 808850 Query 11514 ACTGAGCTAATGGGCCGTC 11532 ||||||||||| |||| || Sbjct 808851 ACTGAGCTAATAGGCCATC 808869 >seq140 Length=583600 Score = 82.4 bits (90), Expect = 4e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| ||||||| || || ||||||||||||||| |||||| Sbjct 462213 TGGCCCATACAGGTTTCGAACCTCCGACCTTTGCATTTTTAGCACGACGCTCTAACCAAC 462154 Query 11516 TGAGCTAAT 11524 ||||||||| Sbjct 462153 TGAGCTAAT 462145 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261487847355952