Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq14 129 5e-25 seq15 120 3e-22 seq124 114 1e-20 seq21 109 5e-19 seq60 84.2 2e-11 seq4 84.2 2e-11 >seq14 Length=2855554 Score = 129 bits (142), Expect = 5e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||| ||||| || ||||||| ||||| || |||||||||||||| || || || Sbjct 999727 ATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTT 999668 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||||| ||| | ||| ||||| | | ||||| || | |||||| Sbjct 999667 GTCTTGAATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGAT 999608 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||||||||| Sbjct 999607 CGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCT 94839 || || | |||||| | |||||| |||| ||| ||||||||||| | ||| ||||| ||| Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | ||| || ||| || || || || || | ||||| || || || || ||||| || Sbjct 999510 -AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGG 999452 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || || || ||||| | ||| |||||||| || | | || || | | || || Sbjct 999451 GATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCAC 999392 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || ||||| | ||||||||||| |||||||| Sbjct 999391 TTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| |||||||||||||| || || | || || || | ||| | ||||| Sbjct 998869 CACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCGTCCTC 998810 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || |||| || | || || ||||| ||||| ||||| || || || | Sbjct 998809 AAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATCTTG 998750 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||||| || | | | || |||| || || |||| |||||||||||| Sbjct 998749 GATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACCTCAAGCGTGATGGTTTT 998690 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || |||||||| || ||||| Sbjct 998689 GCCAGTAAGGGTCTTCACAAATATTTGCAT 998660 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | |||||||||||| || | || |||||| || || ||| || |||| Sbjct 998641 CACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGG-CA-AGGGTTCGACCATCC 998584 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || || || || | ||||| | |||||||| || |||||||| || ||||| || Sbjct 998583 TCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCT 998524 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || |||||||| || | | | || || | || || || | ||||| ||| Sbjct 998523 TGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTGATTGTT 998464 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||||||||| ||||| ||||| Sbjct 998463 TTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || |||| ||| || | ||||||||||| || |||||||| || | Sbjct 999355 AAAAATCTGCATCCCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTAT 999296 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| ||||| || ||| | ||| || || || || || ||||||| | || || Sbjct 999295 GTTGTAATCTGCCAGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTG 999236 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || || || || || || ||||| | || || || || || | | | || || Sbjct 999235 TTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATC 999176 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || | ||||| || || || || | || |||||||| |||||||| Sbjct 999175 AGAGCTCTCCACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116 >seq15 Length=2492501 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| ||||| || ||| | |||||||||||| Sbjct 255635 GTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCCAGCTG 255694 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 ||||| ||||||| || || ||||| ||||||||||| || || ||||| | ||| || Sbjct 255695 CTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGAATCTT 255754 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| ||| | | | || || | | || || || | |||||||| || || || Sbjct 255755 CGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCGGT 255814 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| ||||||||||| Sbjct 255815 AAGGGTCTTCACGAAGATCTGCAT 255838 >seq124 Length=632428 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 94790 AATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTG 94849 || || | ||||||||| | || || || ||||| | ||| |||||| || || | Sbjct 447704 AAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGG 447763 Query 94850 GAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 || || ||||| ||||| | ||||||| || ||||| || || ||||| ||||| Sbjct 447764 CCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCC 447823 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | |||||| ||||| || | | | ||| |||| || || |||| || Sbjct 447824 TTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTA 447883 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || |||||||||||||| |||||||| Sbjct 447884 ATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 111 bits (122), Expect = 1e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| || | | || | |||||| ||||| || |||||||| || | Sbjct 447455 AAAATTTGCATTCCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATA 447514 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || |||| | ||| || || ||||| || | || || | || ||| Sbjct 447515 TTGTAGTCAGCCAGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGC 447574 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || |||||||| ||||| || | || || ||||| || | ||| || ||| Sbjct 447575 TGGTCCGGTGGAATACCCTCTTTATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCA 447634 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||||||||| || |||||||| ||||| ||||| Sbjct 447635 GAGCTTTCCACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 Score = 105 bits (116), Expect = 6e-18 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||||| || || ||||| | |||||| ||| || ||| || Sbjct 354474 CGCAGTACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCG 354415 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 | ||||| || ||||| | || || || || ||||| ||||| || || || ||||| Sbjct 354414 TGTTCCAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTT 354355 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG-TCAATCGTGAT 94971 || | | | || || || || | ||| || |||| | || || || | ||||| Sbjct 354354 TCTTGA-TCTTGGCYTTCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGAT 354296 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| || |||||||| ||||| ||||| Sbjct 354295 GGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260 >seq21 Length=2013095 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| || | || | |||||||||||| ||||| ||||| || | ||||| Sbjct 1809690 TTTGCATCCCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTAT 1809631 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || ||| | ||||||||||| |||||| | ||||| | || ||||| | Sbjct 1809630 AGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGT 1809571 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || || |||||||| | || || ||||| || | | | ||||| | Sbjct 1809570 CTGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAAC 1809511 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || |||||||| || || | || || || || |||||||| Sbjct 1809510 TCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||| | ||| || ||||| || | || ||||| | ||| | | Sbjct 1809898 CGCAGGACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCA 1809839 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | || || | ||||||||||| ||||||||||| || ||| Sbjct 1809838 TCCTCCAGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTG 1809779 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || || || | | | ||||| | | || || || | |||||| Sbjct 1809778 TCCTGAATTTTGGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATG 1809719 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | |||||||||||||| ||||| Sbjct 1809718 GTCTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684 >seq60 Length=1131370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | | ||| |||| ||| | || || |||||||| | ||||||||| | Sbjct 437119 CCTCCCCTGAGCCTCAAGACCAGGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTG-C 437177 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||||| || ||| |||| || || || |||| ||||| |||||||| || || | Sbjct 437178 A-AGTGTTCGACCATCATCCAATTGCTTACCAGCAAAAATTAACCTTTGCTGGTCAGGTG 437236 Query 94899 GAATACCTTCTTTGTCATA 94917 | |||||||||||||| || Sbjct 437237 GGATACCTTCTTTGTCCTA 437255 >seq4 Length=5448771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94796 AACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--T 94853 ||||| | ||| | || || ||||| || | ||| |||||| ||| ||| | | Sbjct 199562 AACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC--TAGGGTTCGGCCGT 199619 Query 94854 CCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGT 94913 |||| ||||| || || ||||||| | | ||||| || || || || || || |||| Sbjct 199620 CCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGT 199679 Query 94914 CATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGG 94973 | | ||| |||||||| || | ||| || || | | || || || | || |||| Sbjct 199680 CCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGG 199739 Query 94974 TTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||||||||||||||| Sbjct 199740 TCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285304970720