Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq51 149 1e-31 seq6 132 8e-27 seq766 111 2e-20 >seq51 Length=1250938 Score = 149 bits (164), Expect = 1e-31 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || || || ||||| || || | |||||| |||||| | ||||| | Sbjct 118944 GAGATAACATTCAGGGCATTACGAAGCCTGCAATTCRTCGTCTCGCTCGTAGAGGTGGCG 118885 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || ||| | || ||||| | | | ||||||||||| |||||| Sbjct 118884 TGAAGCGTATCAGCGGGTTGATTTACGAAGAAACCAGAGGAGTTTTGAAGATTTTCCTCG 118825 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||||| ||||||| | ||| || |||||||| | | ||||| || || Sbjct 118824 AGAATGTTATCCGTGATGCTGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTG 118765 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || |||||||||||| | || || | | | |||||||| ||| ||| Sbjct 118764 CCATGGATGTGGTTTATGCATTGAAAAGGCAGGGAAGGACTTTGTATGGTTTCGGAGGTT 118705 Query 16698 A 16698 | Sbjct 118704 A 118704 Score = 132 bits (146), Expect = 8e-27 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || ||||| ||||| || || || ||||| |||||| | ||||| | Sbjct 115142 GAGACAACATTCAGGGCATCACGAAGCCTGCAATTCGCCGTCTCGCTCGTAGAGGTGGTG 115083 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || ||| ||| ||||||| || | | | ||||||||||| |||||| Sbjct 115082 TGAAGCGCATCAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATTTTCCTCG 115023 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | ||| || |||||||| | | ||||| || ||| Sbjct 115022 AGAATGTGATTCGCGATGCTGTTACCTACACGGAGCACGCCAGGAGGAAGACGGTGACCG 114963 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | |||||||| ||||| | || || | | | ||||| || ||| ||| Sbjct 114962 CCATGGATGTGGTCTATGCGTTGAAGAGGCAGGGAAGAACTCTGTATGGATTCGGAGGTT 114903 Query 16698 A 16698 | Sbjct 114902 A 114902 >seq6 Length=5093711 Score = 132 bits (146), Expect = 8e-27 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || || || ||||| || || || ||| |||||||||| || || ||| Sbjct 4109578 GATAACATCCAGGGCATTACGAAGCCTGCAATTCGCCGTTTGGCTCGTCGAGGCGGCGTC 4109519 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || ||| ||| |||| || || | | | || |||||||| |||||| || Sbjct 4109518 AAGCGAATCAGTGGTTTGATCTACGAGGAAACCAGAGGAGTGTTGAAGATTTTCCTCGAG 4109459 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | ||||||||||||||| | | ||||| |||||| || Sbjct 4109458 AATGTGATTCGCGATGCTGTGACCTATACCGAGCACGCCAGGAGGAAGACGGTCACCGCC 4109399 Query 16640 ATGGATATCGTCTATGCATTGAA 16662 |||||| | || || || ||||| Sbjct 4109398 ATGGATGTGGTTTACGCCTTGAA 4109376 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| || || |||||| |||||||| | || || || Sbjct 4107406 GATAACATTCAGGGCATCACGAAGCCTGCGATTCGTCGTTTGGCTCGTAGAGGCGGCGTA 4107347 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || ||| | |||||||| | | | | ||| |||||||||||||| || Sbjct 4107346 AAGCGGATCAGCGGTTTGATTTATGAAGAAACTAGAGGCGTTCTGAAGATCTTCCTCGAG 4107287 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | ||| || |||||||| | | ||||| || ||| || Sbjct 4107286 AATGTGATTCGCGATGCTGTGACCTACACGGAGCACGCGAGGAGGAAGACGGTTACCGCC 4107227 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | || || | | | || ||||||||| |||| Sbjct 4107226 ATGGATGTGGTTTATGCGCTCAAGAGGCAGGGAAGGACTTTGTACGGTTTTGGAGGTTA 4107168 >seq766 Length=3114 Score = 111 bits (122), Expect = 2e-20 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || || || ||||| || || || ||||| || ||| | ||||| | Sbjct 3072 GAGACAACATTCAGGGCATTACGAAGCCTGCAATTCGCCGTCTCGCCCGTAGAGGTGGTG 3013 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | || ||| | ||||| || | | | ||||||||||| ||||| Sbjct 3012 TGAAGCGTATTAGCGGTTTGATATATGAGGAAACCAGAGGAGTTTTGAAGATTTTCCTTG 2953 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | ||| || |||||||| | | ||||| || || Sbjct 2952 AGAATGTGATTCGCGATGCTGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTG 2893 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| ||||| | || || | | | |||||||||||| ||| Sbjct 2892 CCATGGATGTGGTTTATGCGTTGAAGAGGCAGGGAAGAACTCTGTATGGTTTTGGAGGTT 2833 Query 16698 A 16698 | Sbjct 2832 A 2832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074238149036