Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq51 149 1e-31
seq6 132 8e-27
seq766 111 2e-20
>seq51
Length=1250938
Score = 149 bits (164), Expect = 1e-31
Identities = 177/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||| || || || || ||||| || || | |||||| |||||| | ||||| |
Sbjct 118944 GAGATAACATTCAGGGCATTACGAAGCCTGCAATTCRTCGTCTCGCTCGTAGAGGTGGCG 118885
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || || ||| | || ||||| | | | ||||||||||| ||||||
Sbjct 118884 TGAAGCGTATCAGCGGGTTGATTTACGAAGAAACCAGAGGAGTTTTGAAGATTTTCCTCG 118825
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||||||| ||||||| | ||| || |||||||| | | ||||| || ||
Sbjct 118824 AGAATGTTATCCGTGATGCTGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTG 118765
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | || |||||||||||| | || || | | | |||||||| ||| |||
Sbjct 118764 CCATGGATGTGGTTTATGCATTGAAAAGGCAGGGAAGGACTTTGTATGGTTTCGGAGGTT 118705
Query 16698 A 16698
|
Sbjct 118704 A 118704
Score = 132 bits (146), Expect = 8e-27
Identities = 174/241 (72%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||| || || ||||| ||||| || || || ||||| |||||| | ||||| |
Sbjct 115142 GAGACAACATTCAGGGCATCACGAAGCCTGCAATTCGCCGTCTCGCTCGTAGAGGTGGTG 115083
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| ||||| || ||| ||| ||||||| || | | | ||||||||||| ||||||
Sbjct 115082 TGAAGCGCATCAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATTTTCCTCG 115023
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | |||||| | ||| || |||||||| | | ||||| || |||
Sbjct 115022 AGAATGTGATTCGCGATGCTGTTACCTACACGGAGCACGCCAGGAGGAAGACGGTGACCG 114963
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | |||||||| ||||| | || || | | | ||||| || ||| |||
Sbjct 114962 CCATGGATGTGGTCTATGCGTTGAAGAGGCAGGGAAGAACTCTGTATGGATTCGGAGGTT 114903
Query 16698 A 16698
|
Sbjct 114902 A 114902
>seq6
Length=5093711
Score = 132 bits (146), Expect = 8e-27
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
||||||||||| || || || ||||| || || || ||| |||||||||| || || |||
Sbjct 4109578 GATAACATCCAGGGCATTACGAAGCCTGCAATTCGCCGTTTGGCTCGTCGAGGCGGCGTC 4109519
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| || ||| ||| |||| || || | | | || |||||||| |||||| ||
Sbjct 4109518 AAGCGAATCAGTGGTTTGATCTACGAGGAAACCAGAGGAGTGTTGAAGATTTTCCTCGAG 4109459
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || || | |||||| | ||||||||||||||| | | ||||| |||||| ||
Sbjct 4109458 AATGTGATTCGCGATGCTGTGACCTATACCGAGCACGCCAGGAGGAAGACGGTCACCGCC 4109399
Query 16640 ATGGATATCGTCTATGCATTGAA 16662
|||||| | || || || |||||
Sbjct 4109398 ATGGATGTGGTTTACGCCTTGAA 4109376
Score = 125 bits (138), Expect = 1e-24
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| || || ||||| ||||| || || |||||| |||||||| | || || ||
Sbjct 4107406 GATAACATTCAGGGCATCACGAAGCCTGCGATTCGTCGTTTGGCTCGTAGAGGCGGCGTA 4107347
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| || || ||| | |||||||| | | | | ||| |||||||||||||| ||
Sbjct 4107346 AAGCGGATCAGCGGTTTGATTTATGAAGAAACTAGAGGCGTTCTGAAGATCTTCCTCGAG 4107287
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || || | |||||| | ||| || |||||||| | | ||||| || ||| ||
Sbjct 4107286 AATGTGATTCGCGATGCTGTGACCTACACGGAGCACGCGAGGAGGAAGACGGTTACCGCC 4107227
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|||||| | || ||||| | || | || || | | | || ||||||||| ||||
Sbjct 4107226 ATGGATGTGGTTTATGCGCTCAAGAGGCAGGGAAGGACTTTGTACGGTTTTGGAGGTTA 4107168
>seq766
Length=3114
Score = 111 bits (122), Expect = 2e-20
Identities = 169/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||| || || || || ||||| || || || ||||| || ||| | ||||| |
Sbjct 3072 GAGACAACATTCAGGGCATTACGAAGCCTGCAATTCGCCGTCTCGCCCGTAGAGGTGGTG 3013
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| | || ||| | ||||| || | | | ||||||||||| |||||
Sbjct 3012 TGAAGCGTATTAGCGGTTTGATATATGAGGAAACCAGAGGAGTTTTGAAGATTTTCCTTG 2953
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | |||||| | ||| || |||||||| | | ||||| || ||
Sbjct 2952 AGAATGTGATTCGCGATGCTGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTG 2893
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | || ||||| ||||| | || || | | | |||||||||||| |||
Sbjct 2892 CCATGGATGTGGTTTATGCGTTGAAGAGGCAGGGAAGAACTCTGTATGGTTTTGGAGGTT 2833
Query 16698 A 16698
|
Sbjct 2832 A 2832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074238149036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |