Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 154 2e-32 seq52 105 8e-18 seq5 102 1e-16 >seq6 Length=5093711 Score = 154 bits (170), Expect = 2e-32 Identities = 406/615 (66%), Gaps = 10/615 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || ||||||||||||||||| || ||||||| || | |||||| || | Sbjct 4852241 ACAGCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGA 4852182 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || | ||| ||||| ||||| || || || ||||| ||||||| ||| ||| | Sbjct 4852181 ATGTCAATCCTGGCATAAGGCCTCGTTTCTTCAGCCAGAATATGGCGCAGAAACTTCCCG 4852122 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGC 33472 | ||||| || ||||| || || ||| |||| || | |||| || | || ||| || Sbjct 4852121 AGAAGAAAATACCTTCCACACATGCGAAGCCAATCAGACGCTCTGCAAACGACTCGGAGC 4852062 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||||| ||| | ||||| ||||| ||||| || ||||| | || || | Sbjct 4852061 CGTC---GATCCATTTTAGCGCCCACTCGGCTTTCTTCGCGACGCAAGGTACAGTCTCGA 4852005 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAG 33590 |||| | || | ||| || || ||| || || | || || |||| ||| | Sbjct 4852004 TGGCGTGGAACAACCTGTTCTTCTC--GACTGAGTCCTTGATGTAGGTTTCGAGCAACAA 4851947 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 ||| ||||| || || |||||||| ||||| || || || || || ||||| |||||| Sbjct 4851946 ACTGTACATCTCGGAGTGAATGTTCTCAATTGCGATTTGGAAGCCATAGAACGCTCTAGC 4851887 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 ||| | || ||| || || | || || | || | ||| || || || || || Sbjct 4851886 CTCCGCAACCTGAACCTCCTTCATGAACCGGCCGGCGAGATTCTCCAGAACGATACCATC 4851827 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 ||| || || || |||| || || || |||| |||||||| | || || Sbjct 4851826 GGAGGCGGCGAAGAAGGCCAGAACGTGGGAGATGAAATGCTTTTCGTCGGCCGTGAGGCC 4851767 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | ||||| || || | || | || || || || | ||||| || || ||| Sbjct 4851766 TTCCCAATGGCGGAGGTCCTGTGAGAGGTCGACCTCCTCAGCGGTCCAGAACGAGGCCAT 4851707 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 || || || ||||| | ||| || | | ||| | |||||||| || ||||||| Sbjct 4851706 GGCTTTCTTGTACATTTCCCATATCTGAGGATACTCAATTGGGAACATGCAGAATCTATC 4851647 Query 33891 TGGATTTGGTGCAAG 33905 || || || || || Sbjct 4851646 GGGGTTAGGAGCGAG 4851632 >seq52 Length=1204374 Score = 105 bits (116), Expect = 8e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | || || | ||| ||||| || || |||||||| || ||| | ||| || Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 503409 Query 63672 -TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 || || | ||||| || || ||||| | ||| ||||| || || || || | ||| | Sbjct 503410 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATAA 503468 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||||||||||| || || |||| ||| | | ||||| | ||| || |||||| Sbjct 503469 GCATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCA 503528 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| ||||||||||||| ||| |||||| || || || ||||| Sbjct 503529 GAGTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577 >seq5 Length=5307744 Score = 102 bits (112), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | || || | ||| ||||| || || |||||||| || ||| | ||| || Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 4279774 Query 63672 -TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 || || | ||||| || || ||||| | ||| ||||| || || || || | ||||| Sbjct 4279775 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTA 4279833 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||||| |||||||| || || | ||| | | ||||| | ||| || |||||| Sbjct 4279834 GCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCA 4279893 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| ||||||||||||| || ||||||||| || || || || Sbjct 4279894 GAGTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939008244320